Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 5.4e-245 850.5 417 100.0
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 8.5e-182 640.6 429 73.7
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 7.7e-175 617.5 391 76.0
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 3.8e-174 615.1 426 72.8
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.2e-172 610.1 401 74.3
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 6.1e-172 607.8 385 76.1
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 2.3e-171 605.9 390 74.1
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.4e-168 596.7 403 72.5
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.4e-168 596.7 423 70.0
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 4.1e-168 595.1 402 71.9
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.6e-167 593.2 401 71.6
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.7e-167 592.4 431 68.9
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 7.7e-167 590.9 435 68.0
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 1.3e-166 590.1 423 69.5
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.3e-166 590.1 402 71.4
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.3e-166 590.1 422 70.1
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.2e-166 589.3 406 70.4
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.8e-166 588.6 435 68.0
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 5.0e-166 588.2 436 69.0
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 6.5e-166 587.8 424 68.6
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 8.5e-166 587.4 409 71.6
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.2e-165 585.5 433 68.6
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 3.2e-165 585.5 415 69.6
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.2e-165 585.1 422 69.7
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 4.2e-165 585.1 433 67.2
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 4.2e-165 585.1 395 71.9
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 9.5e-165 583.9 411 70.8
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 9.5e-165 583.9 397 72.0
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.2e-164 583.6 433 68.6
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 2.1e-164 582.8 411 70.6
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.1e-164 582.8 414 69.3
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 3.6e-164 582.0 427 69.1
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 4.0e-163 578.6 421 69.1
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 5.2e-163 578.2 382 73.6
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 8.8e-163 577.4 417 69.5
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.5e-162 576.6 433 65.8
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 2.6e-162 575.9 399 71.2
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 3.4e-162 575.5 406 70.2
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 4.4e-162 575.1 418 67.5
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 5.7e-162 574.7 405 69.6
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 5.7e-162 574.7 419 67.8
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 7.5e-162 574.3 433 67.9
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.3e-161 573.5 406 70.7
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 4.9e-161 571.6 425 66.6
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 4.9e-161 571.6 404 69.6
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 8.3e-161 570.9 426 66.9
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 5.4e-160 568.2 411 67.9
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 7.0e-160 567.8 394 70.6
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.2e-159 567.0 414 66.4
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 2.7e-159 565.8 421 67.9
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.7e-159 565.8 428 67.8
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.7e-159 565.8 431 65.4
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 7.7e-159 564.3 421 67.0
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.7e-159 564.3 410 69.0
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.0e-158 563.9 410 69.3
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.3e-158 563.5 403 69.0
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 1.7e-158 563.1 395 70.1
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.7e-158 563.1 390 71.3
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.3e-158 562.8 420 67.1
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 3.8e-158 562.0 425 65.9
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 6.6e-158 561.2 411 67.2
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 8.6e-158 560.8 407 69.3
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.1e-157 560.5 425 65.9
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.5e-157 560.1 413 69.2
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.3e-157 558.9 405 68.9
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.3e-157 558.9 405 68.9
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 7.3e-157 557.8 406 68.2
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 7.3e-157 557.8 407 70.3
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 1.6e-156 556.6 428 66.4
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.1e-156 556.2 403 66.7
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 3.6e-156 555.4 378 72.2
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 3.6e-156 555.4 420 66.4
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 3.6e-156 555.4 431 65.7
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.0e-155 553.9 395 69.1
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 1.4e-155 553.5 425 64.9
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.3e-155 552.7 385 69.9
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.3e-155 552.7 411 66.9
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 3.0e-155 552.4 408 67.9
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 5.2e-155 551.6 405 69.1
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.0e-154 549.7 430 63.5
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.6e-154 549.3 422 64.5
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 9.8e-154 547.4 445 63.1
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.3e-153 547.0 400 67.5
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.3e-153 547.0 389 69.4
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.3e-153 547.0 401 66.6
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 1.7e-153 546.6 404 66.6
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.7e-153 546.6 415 65.5
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 4.9e-153 545.0 405 67.9
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 4.9e-153 545.0 422 64.0
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 6.4e-153 544.7 404 68.3
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.4e-152 542.7 402 66.4
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.4e-152 542.7 402 66.4
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 7.0e-152 541.2 428 67.1
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.6e-151 540.0 417 65.5
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 3.0e-150 535.8 394 68.3
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 6.6e-150 534.6 391 67.5
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 3.1e-147 525.8 390 67.9
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 3.1e-147 525.8 419 67.1
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 8.9e-147 524.2 323 77.7
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.2e-145 519.6 402 64.7
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 2.9e-145 519.2 385 65.7
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 3.7e-145 518.8 381 65.6
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.9e-145 518.5 395 65.1
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.9e-144 516.5 462 59.5
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 7.0e-144 514.6 384 64.8
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 2.7e-143 512.7 422 63.5
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.9e-141 506.5 406 62.8
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 8.1e-140 501.1 413 60.8
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 8.1e-140 501.1 407 62.4
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.2e-138 497.3 422 61.1
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.3e-137 493.8 425 59.1
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 3.7e-137 492.3 382 65.7
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 6.4e-137 491.5 417 59.7
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.1e-136 490.7 311 75.6
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.1e-136 490.7 332 70.5
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.1e-136 490.7 308 76.3
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.9e-136 490.0 382 65.2
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 2.4e-136 489.6 381 63.0
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 7.1e-136 488.0 385 62.9
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 7.1e-136 488.0 381 62.7
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.2e-135 487.3 398 61.8
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 3.5e-135 485.7 380 61.8
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 7.8e-135 484.6 406 63.8
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.8e-131 473.4 386 63.0
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 3.1e-131 472.6 418 60.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.5e-130 470.3 386 62.7
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.0e-126 457.6 381 60.9
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.9e-121 439.5 252 82.9
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.4e-120 437.2 395 56.2
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.1e-108 394.8 241 76.3
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-107 394.4 238 76.9
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 4.2e-104 382.5 275 67.6
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 7.4e-101 371.7 419 51.1
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.2e-96 356.3 280 63.2
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.6e-95 354.0 387 49.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.6e-90 336.7 250 65.2
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 3.4e-90 336.3 248 63.7
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.7e-89 334.0 278 59.7
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 3.6e-87 326.2 234 68.4
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.6e-87 326.2 273 55.7
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.9e-78 296.2 173 82.7
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.9e-74 282.3 197 74.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 4.0e-62 243.0 167 70.7
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.5e-61 241.1 290 43.1
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 2.0e-53 214.2 202 54.5
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 5.5e-48 196.1 176 55.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.1e-43 181.8 193 50.3
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.8e-43 181.0 146 63.0
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 5.9e-42 176.0 233 41.2
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.3e-40 169.1 165 52.1
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 5.2e-38 162.9 102 74.5
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 6.0e-34 149.4 164 49.4
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 3.9e-33 146.7 82 78.0
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.3e-28 131.7 395 28.4
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.2e-28 131.0 253 36.4
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.9e-28 129.8 297 32.7
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 5.4e-27 126.3 384 30.2
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.2e-26 125.2 79 73.4
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.5e-24 118.2 158 43.7
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 2.1e-23 114.4 232 35.3
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.8e-22 111.3 63 77.8
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.2e-22 109.8 63 76.2
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.9e-22 109.0 63 76.2
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 3.4e-21 107.1 222 34.2
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 3.9e-17 93.6 141 36.2
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 5.1e-17 93.2 72 63.9
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 5.2e-14 83.2 92 46.7
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 6.8e-14 82.8 170 32.9
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.7e-10 70.9 67 47.8
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.0e-09 67.4 38 76.3
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.9e-09 67.0 119 37.0


User provided reference genes

Program Settings