Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 2.5e-184 648.7 328 100.0
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 5.8e-101 371.7 203 93.6
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 1.7e-89 333.6 204 81.9
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 2.1e-87 326.6 204 80.9
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 6.2e-87 325.1 202 80.7
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 2.4e-86 323.2 206 78.2
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 2.6e-85 319.7 207 78.3
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 7.6e-85 318.2 219 73.1
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.3e-84 317.4 204 77.9
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.4e-84 315.1 194 79.4
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.1e-83 314.3 193 80.8
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 9.3e-83 311.2 194 78.9
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 2.7e-82 309.7 179 83.2
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 4.6e-82 308.9 209 74.6
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 7.9e-82 308.1 186 80.6
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.3e-81 307.4 194 77.8
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 5.1e-81 305.4 203 76.4
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 6.7e-81 305.1 208 75.5
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 8.7e-81 304.7 205 75.1
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.5e-80 303.9 209 73.7
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.5e-80 303.9 209 73.7
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 4.3e-80 302.4 185 78.9
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 5.6e-80 302.0 207 72.5
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 5.6e-80 302.0 207 73.9
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 7.4e-80 301.6 199 75.4
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 7.4e-80 301.6 209 72.7
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.3e-79 300.8 208 74.5
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 2.1e-79 300.1 200 75.0
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 2.8e-79 299.7 194 76.8
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 2.8e-79 299.7 201 72.1
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.8e-79 299.7 202 74.3
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 6.2e-79 298.5 204 69.1
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 6.2e-79 298.5 206 73.3
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 8.1e-79 298.1 183 78.1
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.1e-78 297.7 204 75.5
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.8e-78 297.0 208 74.5
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 4.0e-78 295.8 186 78.0
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 5.3e-78 295.4 202 70.3
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 6.9e-78 295.0 202 73.3
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 9.0e-78 294.7 191 76.4
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.2e-77 294.3 179 79.3
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 7.6e-77 291.6 195 74.4
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.6e-77 291.6 181 78.5
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 1.7e-76 290.4 212 71.2
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.7e-76 290.4 179 78.2
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 2.2e-76 290.0 181 76.8
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 2.2e-76 290.0 195 73.8
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 8.4e-76 288.1 202 71.3
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 8.4e-76 288.1 193 74.6
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.4e-75 287.3 178 78.7
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 1.9e-75 287.0 189 73.5
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 2.5e-75 286.6 186 71.5
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 7.1e-75 285.0 201 71.1
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 2.1e-74 283.5 204 69.6
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 2.7e-74 283.1 205 70.7
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 3.5e-74 282.7 204 70.6
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 4.6e-74 282.3 213 67.6
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 7.9e-74 281.6 201 71.6
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 1.0e-73 281.2 204 69.1
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.8e-73 280.4 202 67.8
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 1.8e-73 280.4 191 72.3
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.8e-73 280.4 179 74.9
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 2.3e-73 280.0 213 67.1
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 3.9e-73 279.3 196 72.4
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 5.1e-73 278.9 179 75.4
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 1.1e-72 277.7 197 68.5
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 2.5e-72 276.6 221 64.7
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 4.3e-72 275.8 185 71.4
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 9.6e-72 274.6 206 68.4
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 1.3e-71 274.2 201 67.7
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 3.7e-71 272.7 206 65.0
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 3.7e-71 272.7 209 65.6
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 4.8e-71 272.3 195 71.3
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 1.4e-70 270.8 193 71.5
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 1.4e-70 270.8 185 71.9
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 2.4e-70 270.0 175 74.9
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 2.4e-70 270.0 204 66.2
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 3.1e-70 269.6 212 64.2
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 3.1e-70 269.6 189 69.3
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-69 267.7 170 76.5
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 1.2e-69 267.7 170 76.5
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 1.2e-69 267.7 204 64.7
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 1.5e-69 267.3 170 75.9
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 2.0e-69 266.9 170 75.9
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.0e-69 266.9 169 76.3
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 2.6e-69 266.5 170 75.9
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 2.6e-69 266.5 170 75.9
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 3.4e-69 266.2 170 75.9
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 4.5e-69 265.8 169 75.7
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 5.9e-69 265.4 170 75.3
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 5.9e-69 265.4 201 68.2
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 7.6e-69 265.0 170 74.1
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.3e-68 264.2 205 64.4
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.9e-68 263.1 189 68.8
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-67 261.2 170 74.7
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 1.1e-67 261.2 170 74.7
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 1.1e-67 261.2 170 74.7
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 9.3e-67 258.1 204 65.7
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 9.3e-67 258.1 174 71.3
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 6.1e-66 255.4 195 64.6
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 6.1e-66 255.4 177 69.5
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 8.7e-65 251.5 210 60.0
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 3.3e-64 249.6 212 59.0
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 3.7e-63 246.1 224 58.5
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 6.3e-63 245.4 214 60.7
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 8.2e-63 245.0 272 47.8
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.4e-62 244.2 188 65.4
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 9.1e-62 241.5 224 57.6
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 2.0e-61 240.4 177 65.5
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 1.2e-58 231.1 286 46.5
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 5.7e-56 222.2 202 55.9
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 7.4e-56 221.9 180 61.7
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 9.7e-56 221.5 209 56.0
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 1.3e-55 221.1 227 52.0
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 2.2e-55 220.3 192 59.9
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 6.3e-55 218.8 192 59.4
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 1.0e-52 211.5 170 59.4
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 8.5e-52 208.4 186 59.7
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.1e-51 208.0 141 73.0
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 3.2e-51 206.5 132 78.0
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 2.7e-50 203.4 135 71.1
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 6.1e-50 202.2 141 66.7
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 1.4e-49 201.1 190 55.3
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 6.7e-49 198.7 135 74.1
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 1.7e-47 194.1 134 70.1
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 3.1e-46 189.9 139 68.3
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 4.2e-43 179.5 137 67.9
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 3.0e-41 173.3 132 64.4
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.7e-39 167.5 150 60.0
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.1e-38 164.9 107 72.0
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.6e-37 161.0 169 53.3
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 5.9e-37 159.1 107 68.2
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 3.8e-36 156.4 105 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 2.5e-35 153.7 107 65.4
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.2e-34 151.4 113 60.2
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 5.2e-33 146.0 94 74.5
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 3.4e-32 143.3 92 73.9
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 7.7e-29 132.1 124 55.6
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 7.7e-29 132.1 124 55.6
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 3.7e-23 113.2 86 66.3
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 3.3e-19 100.1 90 54.4
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.6e-18 97.8 67 70.1
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 2.8e-18 97.1 84 64.3
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 1.2e-16 91.7 64 70.3
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 4.4e-16 89.7 76 53.9
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.6e-13 81.3 79 50.6
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 1.7e-12 77.8 54 64.8
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 5.6e-11 72.8 59 55.9
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.6e-10 70.1 48 68.8


User provided reference genes

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