Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 3.7e-236 821.2 436 100.0
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 4.6e-130 468.8 421 62.7
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 2.5e-123 446.4 428 60.5
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 2.7e-106 389.8 405 56.0
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 2.9e-100 369.8 418 50.7
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 4.2e-99 365.9 422 50.5
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 5.5e-99 365.5 422 50.7
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.4e-97 360.9 422 50.5
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 2.8e-95 353.2 415 49.9
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 3.7e-95 352.8 415 49.2
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 3.1e-94 349.7 415 49.9
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 5.4e-94 349.0 422 48.6
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 1.3e-92 344.4 369 53.4
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 5.0e-92 342.4 431 47.3
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 7.2e-91 338.6 389 51.7
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 1.4e-89 334.3 411 47.9
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 3.0e-89 333.2 400 49.0
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 4.4e-88 329.3 419 47.3
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 3.7e-87 326.2 432 44.2
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 1.4e-86 324.3 420 47.1
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 4.1e-86 322.8 398 48.0
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 2.0e-85 320.5 413 47.2
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 2.0e-85 320.5 421 47.5
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 4.5e-85 319.3 410 45.4
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 5.9e-85 318.9 423 45.6
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 5.9e-85 318.9 423 45.6
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.7e-84 317.4 405 47.4
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 2.9e-84 316.6 421 47.5
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.8e-84 316.2 409 45.0
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 5.0e-84 315.8 430 44.7
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 6.6e-84 315.5 408 47.1
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.1e-83 314.7 405 46.9
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 3.3e-83 313.2 389 48.1
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 7.2e-83 312.0 412 45.9
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 4.7e-82 309.3 408 48.0
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 8.0e-82 308.5 418 46.2
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.8e-81 307.4 423 45.4
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 2.3e-81 307.0 389 48.1
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 2.0e-80 303.9 422 44.1
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 3.4e-80 303.1 430 43.5
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 4.4e-80 302.8 424 43.2
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 1.3e-79 301.2 414 45.2
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 1.7e-79 300.8 464 41.6
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 4.9e-79 299.3 409 43.5
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 6.3e-79 298.9 446 41.9
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 8.3e-79 298.5 438 45.0
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.1e-78 298.1 418 44.7
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.4e-78 297.7 397 45.3
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 1.8e-78 297.4 422 46.7
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 3.2e-78 296.6 408 43.6
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 3.2e-78 296.6 438 45.2
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 4.1e-78 296.2 453 42.8
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 5.4e-78 295.8 381 46.7
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 2.0e-77 293.9 394 44.9
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 3.5e-77 293.1 450 42.4
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 3.5e-77 293.1 408 44.9
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 2.3e-76 290.4 382 45.8
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 3.3e-75 286.6 402 42.8
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 9.5e-75 285.0 404 43.3
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 2.8e-74 283.5 409 42.8
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 2.8e-74 283.5 426 42.0
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 8.0e-74 282.0 438 41.6
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 8.0e-74 282.0 438 41.6
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.0e-73 281.6 468 41.0
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.4e-73 281.2 424 40.8
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.8e-73 280.8 411 43.3
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 6.8e-73 278.9 424 41.7
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 2.0e-72 277.3 462 40.0
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 3.4e-72 276.6 430 42.6
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 5.8e-72 275.8 422 42.4
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 5.8e-72 275.8 422 42.4
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 5.8e-72 275.8 463 38.2
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.7e-71 274.2 412 41.3
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 2.2e-71 273.9 430 40.9
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 2.9e-71 273.5 422 42.2
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 5.4e-70 269.2 440 40.2
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 4.6e-69 266.2 416 39.9
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 7.8e-69 265.4 426 41.1
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.3e-68 264.6 426 40.8
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 1.3e-68 264.6 473 38.3
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 3.0e-68 263.5 428 40.2
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 3.0e-68 263.5 430 40.2
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 2.8e-66 256.9 423 40.9
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 4.7e-66 256.1 423 40.7
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 6.2e-66 255.8 416 41.3
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.5e-64 251.1 544 32.9
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 9.8e-64 248.4 436 37.8
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.4e-62 244.6 392 42.9
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.6e-61 241.1 416 37.5
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 1.3e-60 238.0 344 43.0
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 8.9e-57 225.3 426 38.5
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.7e-55 221.1 328 42.7
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 7.8e-53 212.2 213 50.2
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.7e-52 211.1 185 57.8
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.3e-44 184.1 192 49.0
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 4.8e-42 176.4 493 30.2
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 5.4e-38 162.9 281 38.4
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.9e-31 140.6 414 30.7
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.9e-31 140.6 414 30.7
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 1.8e-28 131.3 300 30.7
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 4.3e-27 126.7 172 42.4
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.1e-25 122.1 126 54.8
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 5.8e-24 116.3 122 49.2
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 1.3e-23 115.2 260 35.4
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.7e-21 107.5 138 50.7
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 7.9e-21 105.9 110 53.6
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.3e-20 104.4 202 33.7
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 5.1e-20 103.2 77 58.4
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.6e-16 90.9 167 37.7
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 4.5e-16 90.1 67 58.2
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 5.5e-14 83.2 66 56.1
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 7.2e-14 82.8 174 36.8
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.5e-11 75.1 397 25.2
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 4.3e-11 73.6 83 44.6
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 1.3e-07 62.0 74 37.8
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.2e-06 57.4 122 35.2
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 5.5e-06 56.6 151 29.8


User provided reference genes

Program Settings