Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 2.3e-102 375.6 184 100.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 5.7e-37 158.3 87 83.9
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 5.7e-37 158.3 85 87.1
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 9.6e-37 157.5 87 82.8
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 9.6e-37 157.5 87 82.8
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.6e-36 156.8 87 82.8
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 2.8e-36 156.0 85 84.7
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 8.2e-36 154.5 87 80.5
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 8.2e-36 154.5 87 80.5
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 1.1e-35 154.1 86 81.4
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.8e-35 153.3 87 80.5
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 2.4e-35 152.9 87 79.3
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 3.1e-35 152.5 87 80.5
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 3.1e-35 152.5 87 79.3
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 5.3e-35 151.8 87 78.2
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 5.3e-35 151.8 87 79.3
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 6.9e-35 151.4 87 79.3
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 6.9e-35 151.4 87 78.2
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 9.0e-35 151.0 124 58.9
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.5e-34 150.2 87 77.0
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.0e-34 149.8 87 79.3
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 2.0e-34 149.8 140 57.1
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 2.6e-34 149.4 87 78.2
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 4.5e-34 148.7 87 77.0
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 4.5e-34 148.7 87 77.0
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 4.5e-34 148.7 87 77.0
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 4.5e-34 148.7 87 77.0
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 4.5e-34 148.7 87 78.2
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 5.8e-34 148.3 87 77.0
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 5.8e-34 148.3 87 77.0
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 5.8e-34 148.3 87 77.0
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 5.8e-34 148.3 87 78.2
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 7.6e-34 147.9 87 75.9
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.0e-33 147.5 86 79.1
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.0e-33 147.5 120 62.5
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.0e-33 147.5 87 77.0
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 1.3e-33 147.1 123 60.2
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.3e-33 147.1 87 77.0
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.3e-33 147.1 87 77.0
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.3e-33 147.1 86 77.9
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.3e-33 147.1 87 75.9
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-33 146.7 87 77.0
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-33 146.7 87 77.0
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 2.2e-33 146.4 123 57.7
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 2.2e-33 146.4 86 76.7
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 2.2e-33 146.4 87 75.9
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 2.9e-33 146.0 86 76.7
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 3.8e-33 145.6 87 74.7
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.8e-33 145.6 87 75.9
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.8e-33 145.6 87 75.9
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 3.8e-33 145.6 87 75.9
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.8e-33 145.6 87 75.9
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 5.0e-33 145.2 87 74.7
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 5.0e-33 145.2 87 74.7
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.0e-33 145.2 87 75.9
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 5.0e-33 145.2 87 74.7
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 6.5e-33 144.8 87 74.7
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 6.5e-33 144.8 87 75.9
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 8.4e-33 144.4 87 74.7
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 8.4e-33 144.4 87 75.9
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 8.4e-33 144.4 87 74.7
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 8.4e-33 144.4 86 75.6
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.1e-32 144.1 86 75.6
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.1e-32 144.1 87 77.0
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.1e-32 144.1 87 77.0
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.4e-32 143.7 87 72.4
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.4e-32 143.7 87 75.9
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.4e-32 143.7 86 75.6
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.9e-32 143.3 87 74.7
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.9e-32 143.3 87 75.9
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 1.9e-32 143.3 87 74.7
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.9e-32 143.3 86 75.6
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 2.5e-32 142.9 87 74.7
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 2.5e-32 142.9 86 76.7
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 2.5e-32 142.9 87 73.6
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 3.2e-32 142.5 106 64.2
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 3.2e-32 142.5 86 74.4
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.2e-32 142.5 86 74.4
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.2e-32 142.5 86 74.4
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 3.2e-32 142.5 86 74.4
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 4.2e-32 142.1 87 73.6
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 4.2e-32 142.1 86 76.7
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 4.2e-32 142.1 86 75.6
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 5.5e-32 141.7 86 74.4
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 5.5e-32 141.7 86 74.4
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 7.2e-32 141.4 87 73.6
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 7.2e-32 141.4 87 73.6
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.2e-32 141.4 86 74.4
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 7.2e-32 141.4 87 72.4
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 7.2e-32 141.4 87 73.6
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 7.2e-32 141.4 87 74.7
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 7.2e-32 141.4 86 74.4
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 7.2e-32 141.4 87 73.6
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 9.3e-32 141.0 86 74.4
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 9.3e-32 141.0 87 75.9
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.2e-31 140.6 87 73.6
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 1.2e-31 140.6 87 73.6
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 1.2e-31 140.6 87 73.6
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.2e-31 140.6 86 74.4
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 2.1e-31 139.8 86 74.4
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 2.1e-31 139.8 87 74.7
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.1e-31 139.8 86 72.1
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.7e-31 139.4 86 73.3
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 2.7e-31 139.4 86 73.3
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.7e-31 139.4 86 74.4
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 2.7e-31 139.4 86 74.4
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 3.5e-31 139.0 87 72.4
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.6e-31 138.7 87 71.3
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 6.1e-31 138.3 87 72.4
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 7.9e-31 137.9 87 72.4
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 7.9e-31 137.9 86 73.3
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 7.9e-31 137.9 86 73.3
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.0e-30 137.5 87 70.1
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.3e-30 137.1 87 70.1
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.9e-29 133.3 86 73.3
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.5e-29 132.9 86 68.6
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.3e-28 130.6 95 65.3
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.6e-28 130.2 85 67.1
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 2.2e-28 129.8 87 66.7
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 3.7e-28 129.0 87 64.4
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 4.8e-28 128.6 86 66.3
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.4e-27 127.1 89 65.2
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.8e-27 126.7 86 67.4
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 6.5e-25 118.2 85 62.4
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.3e-22 109.8 87 60.9
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 9.7e-21 104.4 68 69.1
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-20 102.8 86 57.0
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 9.4e-16 87.8 56 69.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 4.7e-15 85.5 86 46.5
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.0e-14 84.3 87 42.5
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.4e-14 84.0 81 44.4
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 2.3e-14 83.2 54 68.5
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 3.9e-14 82.4 59 66.1
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 7.4e-13 78.2 70 48.6
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.7e-12 77.0 81 42.0
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 4.8e-12 75.5 48 66.7
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-11 74.3 89 41.6
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.4e-11 73.2 49 61.2
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 3.1e-11 72.8 47 68.1
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 3.5e-10 69.3 40 77.5
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.7e-09 67.0 39 79.5
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 5.0e-09 65.5 76 47.4
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 1.2e-07 60.8 34 82.4
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 8.0e-07 58.2 54 44.4


User provided reference genes

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