Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-59 231.9 115 100.0
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 8.1e-58 226.9 115 98.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-48 195.7 98 99.0
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-48 195.7 98 99.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-48 195.7 98 99.0
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-48 195.7 98 99.0
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-48 195.7 98 99.0
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-47 192.6 98 96.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 8.4e-47 190.3 109 89.0
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.4e-46 189.5 110 86.4
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 3.2e-46 188.3 98 95.9
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 5.4e-46 187.6 110 86.4
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 9.3e-46 186.8 112 83.9
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.6e-45 186.0 116 81.0
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 3.5e-45 184.9 110 84.5
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 4.6e-45 184.5 109 84.4
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.6e-45 184.5 112 82.1
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 7.9e-45 183.7 112 83.9
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 7.9e-45 183.7 127 78.0
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.0e-44 183.3 109 82.6
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.0e-44 183.3 109 85.3
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.3e-44 183.0 107 84.1
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.3e-44 183.0 107 84.1
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 2.3e-44 182.2 110 83.6
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.3e-44 182.2 109 83.5
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 3.0e-44 181.8 110 82.7
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 3.0e-44 181.8 109 84.4
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 5.1e-44 181.0 111 83.8
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 6.6e-44 180.6 113 79.6
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 8.7e-44 180.3 110 82.7
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.9e-43 179.1 110 83.6
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.9e-43 179.1 110 80.9
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.5e-43 178.7 109 81.7
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 3.3e-43 178.3 106 84.9
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 4.3e-43 177.9 108 81.5
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 5.6e-43 177.6 111 81.1
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 7.3e-43 177.2 115 74.8
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 7.3e-43 177.2 110 82.7
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 9.6e-43 176.8 108 81.5
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.6e-43 176.8 111 81.1
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-42 176.4 112 79.5
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.3e-42 176.4 107 83.2
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.6e-42 176.0 109 79.8
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.6e-42 176.0 109 79.8
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 2.1e-42 175.6 108 79.6
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.8e-42 175.3 112 79.5
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 3.6e-42 174.9 109 80.7
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 3.6e-42 174.9 109 80.7
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 4.8e-42 174.5 110 80.9
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 6.2e-42 174.1 106 83.0
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 6.2e-42 174.1 109 80.7
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 6.2e-42 174.1 108 81.5
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 8.1e-42 173.7 109 80.7
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 8.1e-42 173.7 109 79.8
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.1e-41 173.3 109 79.8
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.1e-41 173.3 109 79.8
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.1e-41 173.3 108 77.8
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.4e-41 172.9 110 80.9
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.4e-41 172.9 105 82.9
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.4e-41 172.9 108 77.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.8e-41 172.6 108 77.8
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.8e-41 172.6 112 77.7
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.4e-41 172.2 108 76.9
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 2.4e-41 172.2 112 78.6
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 2.4e-41 172.2 109 79.8
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.1e-41 171.8 109 79.8
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.0e-41 171.4 109 78.9
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 4.0e-41 171.4 110 79.1
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 5.3e-41 171.0 110 78.2
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 5.3e-41 171.0 108 80.6
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 9.0e-41 170.2 110 79.1
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.2e-40 169.9 109 78.0
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 1.5e-40 169.5 112 76.8
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.5e-40 169.5 106 81.1
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 1.5e-40 169.5 106 81.1
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.5e-40 169.5 108 77.8
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 2.0e-40 169.1 113 76.1
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-40 169.1 111 76.6
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-40 169.1 111 76.6
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.0e-40 169.1 110 79.1
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.0e-40 169.1 110 76.4
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.6e-40 168.7 108 76.9
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 3.4e-40 168.3 107 77.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 5.8e-40 167.5 105 79.0
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 7.6e-40 167.2 109 74.3
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 9.9e-40 166.8 109 74.3
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 9.9e-40 166.8 108 76.9
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 9.9e-40 166.8 109 74.3
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.3e-39 166.4 116 71.6
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.3e-39 166.4 108 78.7
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.3e-39 166.4 108 76.9
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 1.3e-39 166.4 105 81.0
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.3e-39 166.4 108 77.8
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 1.7e-39 166.0 108 75.0
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.7e-39 166.0 110 75.5
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 2.2e-39 165.6 103 79.6
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.2e-39 165.6 114 71.9
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 2.2e-39 165.6 106 77.4
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.2e-39 165.6 111 76.6
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.9e-39 165.2 108 75.0
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.9e-39 165.2 109 75.2
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-39 165.2 99 83.8
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 4.9e-39 164.5 99 82.8
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 4.9e-39 164.5 108 77.8
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 6.4e-39 164.1 106 76.4
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 6.4e-39 164.1 110 78.2
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 6.4e-39 164.1 111 75.7
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 8.4e-39 163.7 108 74.1
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 8.4e-39 163.7 109 75.2
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.1e-38 163.3 110 75.5
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.1e-38 163.3 105 80.0
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.4e-38 162.9 106 76.4
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.4e-38 162.9 106 75.5
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.4e-38 162.9 103 77.7
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.4e-38 162.9 106 75.5
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.4e-38 162.9 108 75.0
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.4e-38 162.9 114 74.6
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.4e-38 162.2 101 83.2
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 3.2e-38 161.8 106 74.5
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.6e-37 159.5 99 82.8
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.6e-37 159.5 108 76.9
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-37 159.5 98 82.7
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.1e-37 159.1 106 76.4
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.1e-37 159.1 101 81.2
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 6.0e-37 157.5 101 81.2
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 7.9e-37 157.1 101 77.2
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-36 156.4 106 74.5
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.3e-36 156.4 101 79.2
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.0e-36 155.2 106 75.5
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.1e-36 154.5 99 79.8
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 6.7e-36 154.1 95 82.1
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 6.7e-36 154.1 107 72.0
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 6.7e-36 154.1 109 69.7
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 3.3e-35 151.8 106 73.6
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.4e-33 145.6 111 63.1
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 2.4e-33 145.6 95 78.9
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 5.3e-33 144.4 84 85.7
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 6.9e-33 144.1 85 85.9
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.2e-32 143.3 92 80.4
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.5e-32 142.9 109 64.2
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 7.6e-32 140.6 82 85.4
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 8.4e-31 137.1 84 81.0
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.4e-30 136.3 111 63.1
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.5e-30 135.6 86 79.1
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.2e-30 134.8 83 80.7
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 7.1e-30 134.0 84 79.8
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.1e-27 126.7 82 81.7
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.6e-24 115.5 68 86.8
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 3.4e-24 115.2 78 75.6
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.7e-23 112.8 95 66.3
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 6.7e-20 100.9 65 76.9
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 2.2e-18 95.9 62 79.0
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 5.3e-17 91.3 54 77.8
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 9.0e-17 90.5 51 84.3
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.1e-14 83.6 58 75.9
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 5.5e-14 81.3 63 60.3
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 5.5e-14 81.3 116 37.9
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.7e-13 79.0 89 46.1
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 3.3e-11 72.0 75 56.0
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.4e-09 65.9 68 58.8
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 9.1e-09 63.9 88 50.0
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.5e-08 63.2 129 31.8


User provided reference genes

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