Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 6.7e-56 220.7 132 100.0
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 6.7e-40 167.5 110 79.1
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.7e-35 152.9 111 82.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.7e-35 152.9 111 82.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.7e-35 152.9 111 82.0
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.7e-35 152.9 111 89.2
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 2.9e-35 152.1 112 86.6
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 2.9e-35 152.1 111 84.7
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.5e-35 150.6 111 84.7
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.1e-34 150.2 117 81.2
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.4e-34 149.8 111 84.7
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.4e-34 149.8 117 80.3
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.9e-34 149.4 117 80.3
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.9e-34 149.4 111 81.1
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 9.3e-34 147.1 117 59.8
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 1.6e-33 146.4 117 79.5
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.9e-31 139.4 111 79.3
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.5e-31 139.0 111 82.0
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 4.3e-31 138.3 106 84.0
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 9.7e-31 137.1 105 60.0
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.3e-30 136.7 110 80.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.3e-30 134.4 111 78.4
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 3.4e-28 128.6 111 76.6
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 5.9e-28 127.9 118 72.0
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 5.0e-27 124.8 124 54.0
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.0e-27 124.8 124 54.0
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.1e-26 123.6 124 53.2
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.4e-26 123.2 122 53.3
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.4e-26 123.2 120 54.2
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 2.1e-25 119.4 108 75.9
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 6.1e-25 117.9 111 72.1
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.8e-24 116.3 117 57.3
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 3.9e-24 115.2 111 72.1
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 1.5e-23 113.2 96 53.1
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 2.2e-22 109.4 117 47.0
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.8e-22 109.0 117 65.0
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.8e-22 108.2 111 69.4
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.8e-22 108.2 111 69.4
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 4.8e-22 108.2 111 69.4
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 6.3e-22 107.8 111 69.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 8.2e-22 107.5 111 69.4
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.4e-21 106.7 117 64.1
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.8e-21 106.3 105 71.4
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.4e-21 105.9 111 68.5
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.4e-21 105.9 111 68.5
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.1e-21 105.5 111 48.6
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.2e-20 103.6 117 64.1
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.2e-20 103.6 111 67.6
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.5e-20 103.2 117 50.4
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.5e-20 103.2 111 64.9
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.6e-20 102.4 117 64.1
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.5e-20 101.7 117 62.4
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 7.7e-20 100.9 111 66.7
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.0e-19 100.5 109 67.9
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.0e-19 100.5 111 48.6
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.0e-19 100.5 112 53.6
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.7e-19 99.8 121 46.3
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.7e-19 99.8 117 63.2
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.7e-19 99.8 116 62.9
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.8e-19 98.6 111 65.8
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 6.5e-19 97.8 111 46.8
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 6.5e-19 97.8 116 43.1
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 8.5e-19 97.4 117 62.4
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.5e-19 97.4 82 57.3
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.1e-18 97.1 111 64.0
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.1e-18 97.1 112 58.0
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.9e-18 96.3 111 43.2
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.9e-18 96.3 111 63.1
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.5e-18 95.9 111 42.3
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 2.5e-18 95.9 103 68.0
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.5e-18 95.9 120 61.7
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.5e-18 95.9 117 61.5
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 2.5e-18 95.9 111 65.8
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 3.2e-18 95.5 111 46.8
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.2e-18 95.5 111 49.5
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 3.2e-18 95.5 111 63.1
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 4.2e-18 95.1 111 44.1
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.5e-18 94.7 111 64.9
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 5.5e-18 94.7 99 49.5
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 5.5e-18 94.7 117 43.6
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 5.5e-18 94.7 111 62.2
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 7.2e-18 94.4 111 65.8
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 7.2e-18 94.4 111 65.8
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 9.4e-18 94.0 105 66.7
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.2e-17 93.6 111 41.4
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.2e-17 93.6 111 41.4
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.6e-17 93.2 111 49.5
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 3.6e-17 92.0 117 60.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 6.1e-17 91.3 111 45.0
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 6.1e-17 91.3 111 53.2
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 8.0e-17 90.9 111 48.6
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 8.0e-17 90.9 111 44.1
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.0e-16 90.5 111 52.3
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.8e-16 89.7 111 63.1
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 3.0e-16 89.0 111 60.4
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 3.0e-16 89.0 111 60.4
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 3.0e-16 89.0 111 40.5
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.0e-16 89.0 111 61.3
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 3.0e-16 89.0 110 40.9
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 5.2e-16 88.2 105 42.9
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.1e-15 87.0 111 43.2
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.1e-15 87.0 113 44.2
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.5e-15 86.7 111 60.4
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.7e-15 84.7 111 42.3
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 7.4e-15 84.3 111 58.6
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 9.7e-15 84.0 111 56.8
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.7e-14 83.2 103 62.1
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.2e-14 82.8 111 41.4
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.1e-13 80.5 111 36.9
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 7.0e-13 77.8 117 56.4
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.0e-13 77.8 71 53.5
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 7.0e-13 77.8 71 53.5
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 7.0e-13 77.8 71 53.5
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.2e-12 77.0 71 53.5
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.6e-12 76.6 110 41.8
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.6e-12 76.6 105 58.1
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 2.0e-12 76.3 110 36.4
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-12 76.3 110 36.4
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-12 76.3 110 36.4
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.0e-12 76.3 110 36.4
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 2.0e-12 76.3 110 36.4
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.6e-12 75.9 106 39.6
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.6e-12 75.9 110 58.2
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 3.5e-12 75.5 111 55.9
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 7.7e-12 74.3 47 68.1
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 7.7e-12 74.3 111 35.1
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 7.7e-12 74.3 73 49.3
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.0e-11 73.9 106 56.6
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.0e-11 73.9 106 56.6
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 1.7e-11 73.2 111 55.0
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-11 73.2 111 56.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.9e-11 72.4 110 54.5
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.9e-11 72.4 110 54.5
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.9e-11 72.4 110 54.5
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.9e-11 72.4 110 54.5
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.8e-11 72.0 111 35.1
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.8e-11 72.0 107 35.5
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.1e-10 70.5 110 50.0
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.5e-10 70.1 108 34.3
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.5e-10 70.1 114 51.8
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.5e-10 70.1 98 37.8
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.5e-10 70.1 117 55.6
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.9e-10 69.7 108 33.3
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.5e-10 69.3 110 55.5
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 5.5e-10 68.2 98 57.1
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 5.5e-10 68.2 86 41.9
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 7.5e-07 57.8 103 30.1


User provided reference genes

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