Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 3.0e-154 548.5 282 100.0
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.3e-117 426.8 286 80.4
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 2.3e-106 389.4 289 73.0
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 2.5e-100 369.4 286 71.3
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 2.5e-100 369.4 288 70.1
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 4.4e-97 358.6 285 70.9
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 7.4e-97 357.8 285 69.5
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.6e-94 350.1 285 67.7
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 3.6e-91 339.0 288 67.4
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 1.0e-90 337.4 299 66.2
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.0e-89 333.2 299 66.2
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.7e-88 330.1 305 63.0
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.7e-88 330.1 286 66.1
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 1.7e-88 330.1 289 65.7
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.8e-88 329.3 300 64.7
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.1e-87 327.4 282 64.9
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 1.8e-87 326.6 286 67.1
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.8e-87 326.6 290 66.6
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 4.1e-87 325.5 291 65.3
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 4.1e-87 325.5 299 65.2
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 2.0e-86 323.2 290 67.2
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 2.0e-86 323.2 291 64.6
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 2.0e-86 323.2 286 66.4
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.0e-86 323.2 293 65.5
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.0e-86 323.2 294 65.3
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.7e-86 322.8 288 64.9
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 4.5e-86 322.0 287 65.5
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 5.9e-86 321.6 292 64.4
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 5.9e-86 321.6 287 66.2
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 5.9e-86 321.6 285 65.3
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 5.9e-86 321.6 252 71.0
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.0e-85 320.9 301 62.1
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.9e-85 319.3 295 63.7
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.0e-85 318.5 296 63.2
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.1e-84 317.4 251 71.3
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.5e-84 317.0 296 62.8
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.5e-84 316.2 213 79.8
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 7.2e-84 314.7 286 64.0
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 7.2e-84 314.7 288 63.2
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 9.4e-84 314.3 286 65.4
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 9.4e-84 314.3 300 63.0
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 3.6e-83 312.4 288 63.5
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 3.6e-83 312.4 284 64.4
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.7e-83 312.0 291 63.6
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 4.7e-83 312.0 297 62.6
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 4.7e-83 312.0 294 63.9
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.0e-82 310.8 295 62.4
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.0e-82 310.8 288 63.2
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.0e-82 310.8 288 63.2
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 1.0e-82 310.8 301 61.1
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.4e-82 310.5 284 64.8
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.8e-82 310.1 296 62.5
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.3e-82 309.7 296 62.5
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.3e-82 309.7 298 62.4
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 3.0e-82 309.3 205 79.0
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.0e-82 308.9 281 63.7
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 5.2e-82 308.5 244 72.1
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 5.2e-82 308.5 295 62.4
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 6.8e-82 308.1 297 62.0
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 6.8e-82 308.1 296 62.2
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 6.8e-82 308.1 284 62.0
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 6.8e-82 308.1 296 63.5
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.2e-81 307.4 295 63.4
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 1.5e-81 307.0 203 80.8
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.5e-81 307.0 244 72.1
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.5e-81 307.0 296 61.5
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 2.6e-81 306.2 291 63.6
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 3.4e-81 305.8 290 62.8
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 4.4e-81 305.4 285 61.8
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 7.5e-81 304.7 242 71.9
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 7.5e-81 304.7 240 70.4
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 9.8e-81 304.3 285 63.9
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 9.8e-81 304.3 212 77.4
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 9.8e-81 304.3 213 76.5
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.3e-80 303.9 283 62.9
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 1.7e-80 303.5 290 62.1
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 1.7e-80 303.5 237 70.0
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.2e-80 303.1 290 61.7
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.8e-80 302.8 293 60.8
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.7e-80 302.4 295 62.0
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 4.9e-80 302.0 298 60.7
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 4.9e-80 302.0 213 75.6
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 6.3e-80 301.6 287 62.4
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 6.3e-80 301.6 237 69.6
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 8.3e-80 301.2 195 79.5
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 8.3e-80 301.2 243 69.1
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-79 300.8 276 64.9
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.8e-79 300.1 250 67.6
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 4.1e-79 298.9 235 71.5
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 4.1e-79 298.9 300 60.7
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 5.4e-79 298.5 271 64.9
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 5.4e-79 298.5 291 60.5
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 2.0e-78 296.6 282 63.1
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.0e-78 296.6 282 61.7
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.7e-78 296.2 193 80.3
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 5.9e-78 295.0 296 59.5
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 7.7e-78 294.7 240 69.2
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.0e-77 294.3 246 68.3
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.0e-77 294.3 246 68.3
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 1.3e-77 293.9 301 59.8
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-77 293.9 249 67.5
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-77 293.9 252 66.3
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-77 293.9 251 67.3
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 1.3e-77 293.9 245 69.0
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 2.3e-77 293.1 249 67.5
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 2.3e-77 293.1 241 69.3
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.3e-77 293.1 295 62.4
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 2.9e-77 292.7 203 77.3
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.9e-77 292.7 294 61.9
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 8.6e-77 291.2 213 73.7
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 8.6e-77 291.2 241 67.2
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.9e-76 290.0 245 67.3
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 1.9e-76 290.0 272 62.9
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 3.3e-76 289.3 205 77.6
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.3e-76 289.3 205 77.6
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 4.2e-76 288.9 286 60.1
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 7.2e-76 288.1 200 77.5
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 2.1e-75 286.6 245 67.3
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.8e-75 286.2 302 59.6
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 3.6e-75 285.8 192 78.6
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 6.1e-75 285.0 290 60.3
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 2.6e-73 279.6 343 53.4
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 3.4e-73 279.3 230 67.0
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 9.8e-73 277.7 361 51.0
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 3.7e-72 275.8 191 77.5
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 7.0e-71 271.6 319 53.9
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.6e-70 270.4 269 59.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.0e-69 267.7 218 65.6
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.7e-69 266.9 197 73.1
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 2.3e-69 266.5 256 63.3
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 6.6e-69 265.0 200 70.0
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 8.0e-67 258.1 178 75.8
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 2.3e-66 256.5 248 60.5
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 4.0e-66 255.8 273 59.0
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.0e-65 253.4 227 63.4
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 2.6e-65 253.1 179 73.2
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 5.8e-65 251.9 305 52.5
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.8e-65 251.1 214 62.6
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.1e-63 247.7 200 65.5
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.9e-63 246.9 229 62.4
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 5.4e-63 245.4 209 67.5
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 5.4e-63 245.4 226 61.9
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 3.5e-62 242.7 306 52.0
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 2.3e-61 240.0 219 59.4
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.9e-52 210.3 181 61.3
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 7.3e-52 208.4 204 57.8
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.1e-51 206.8 208 57.7
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 8.4e-48 194.9 188 59.6
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 8.1e-43 178.3 190 56.3
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.5e-36 157.5 105 81.9
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 1.2e-33 147.9 287 39.4
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.9e-31 140.6 186 45.2
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 9.3e-31 138.3 126 59.5
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.7e-29 134.0 89 75.3
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.6e-27 127.5 201 39.3
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.2e-22 111.3 197 40.6
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 6.0e-22 109.0 148 44.6
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 3.0e-21 106.7 97 56.7
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 2.8e-19 100.1 63 82.5
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 8.1e-19 98.6 63 81.0
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 4.0e-18 96.3 76 68.4
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 2.5e-12 77.0 187 32.6
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 3.8e-08 63.2 60 60.0


User provided reference genes

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