Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 0.0e+00 1092.8 578 100.0
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 6.1e-263 910.6 575 84.9
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 2.0e-261 905.6 586 83.6
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 7.0e-259 897.1 608 81.2
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 1.2e-258 896.3 584 83.4
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 8.8e-254 880.2 590 80.7
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 2.6e-253 878.6 581 82.3
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 2.6e-253 878.6 498 90.8
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 8.3e-252 873.6 582 81.1
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.5e-250 868.2 568 82.7
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 4.5e-250 867.8 579 81.3
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 7.7e-250 867.1 583 81.1
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 1.0e-249 866.7 583 80.4
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 2.9e-249 865.1 564 82.6
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 5.0e-249 864.4 568 81.0
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 6.6e-249 864.0 568 81.0
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 1.1e-248 863.2 548 84.7
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 7.3e-248 860.5 568 82.9
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 9.5e-248 860.1 577 81.1
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 2.1e-247 859.0 579 80.7
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.6e-247 858.2 575 80.0
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 4.7e-247 857.8 577 81.8
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.8e-246 855.9 522 86.8
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.0e-246 855.1 555 82.5
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 3.0e-246 855.1 551 82.2
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.2e-246 854.4 589 78.6
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 8.9e-246 853.6 572 80.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 8.9e-246 853.6 571 79.2
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.2e-245 853.2 523 86.6
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.5e-245 852.8 565 82.3
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.0e-245 852.4 555 82.7
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.0e-245 852.4 581 80.2
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 3.4e-245 851.7 551 81.5
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 4.4e-245 851.3 579 80.5
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.9e-244 848.6 581 80.0
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 3.7e-244 848.2 583 79.4
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 4.9e-244 847.8 562 80.8
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 6.4e-244 847.4 581 78.8
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 3.2e-243 845.1 563 81.3
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 3.2e-243 845.1 583 79.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 4.1e-243 844.7 583 79.2
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 9.2e-243 843.6 559 81.6
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 9.2e-243 843.6 559 81.6
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 9.2e-243 843.6 538 82.0
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 9.2e-243 843.6 492 88.4
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 9.2e-243 843.6 575 79.7
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.2e-242 843.2 588 78.1
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.2e-242 843.2 555 82.2
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.6e-242 842.8 552 82.2
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 2.0e-242 842.4 552 81.0
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 2.0e-242 842.4 594 78.3
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.0e-242 842.4 538 81.6
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.5e-242 841.6 563 80.3
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 4.6e-242 841.3 540 81.9
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.9e-242 840.9 555 80.7
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 5.9e-242 840.9 576 78.1
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 5.9e-242 840.9 578 77.9
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 7.8e-242 840.5 576 78.1
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 2.3e-241 839.0 575 77.9
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 2.3e-241 839.0 575 78.3
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 2.3e-241 839.0 510 86.3
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.0e-241 838.6 574 79.4
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.0e-241 838.6 571 78.1
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.1e-240 836.6 551 80.9
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.9e-240 835.9 580 77.8
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 2.5e-240 835.5 556 81.5
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 3.3e-240 835.1 536 81.7
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 5.6e-240 834.3 583 78.2
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 7.3e-240 833.9 575 77.4
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 7.3e-240 833.9 582 78.0
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.1e-239 832.4 548 81.8
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 6.2e-239 830.9 539 83.5
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 6.2e-239 830.9 578 77.9
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.0e-238 830.1 564 78.5
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.8e-238 829.3 550 80.5
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.8e-238 829.3 537 81.9
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 3.1e-238 828.6 554 79.6
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.1e-238 828.6 577 78.2
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 6.8e-238 827.4 548 79.9
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 8.9e-238 827.0 555 79.1
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.5e-237 826.2 536 83.8
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.5e-237 826.2 573 78.4
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 2.0e-237 825.9 551 80.9
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 2.0e-237 825.9 549 80.3
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 2.6e-237 825.5 562 80.2
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 2.6e-237 825.5 537 81.2
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 7.5e-237 823.9 549 80.1
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.7e-236 822.8 554 79.1
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 1.7e-236 822.8 549 79.6
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 4.9e-236 821.2 576 79.7
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 4.9e-236 821.2 513 84.0
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.9e-235 819.3 532 82.0
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 4.1e-235 818.1 561 79.0
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 3.5e-234 815.1 587 76.3
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 7.5e-229 797.3 536 81.0
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.9e-227 792.7 489 84.5
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.4e-222 776.5 532 77.3
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 2.6e-221 772.3 507 80.1
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 5.4e-219 764.6 498 82.1
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.2e-218 763.5 436 91.5
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 7.8e-218 760.8 462 84.4
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.1e-217 758.1 501 78.8
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.2e-211 738.4 438 87.2
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 6.0e-210 734.6 481 80.5
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 3.0e-209 732.3 458 81.7
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 2.5e-208 729.2 438 86.1
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 4.8e-207 724.9 519 74.0
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 8.1e-207 724.2 736 59.5
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 9.0e-206 720.7 502 74.1
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 7.6e-205 717.6 430 87.4
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.2e-203 711.8 572 68.4
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 6.0e-202 708.0 570 70.7
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.4e-198 696.0 488 73.8
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.7e-196 689.9 553 66.5
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.8e-193 679.9 397 89.4
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 8.1e-191 671.0 440 80.7
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 2.3e-185 652.9 406 83.3
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 3.9e-185 652.1 422 80.8
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.1e-182 642.5 438 75.1
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 5.3e-182 641.7 390 85.4
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 7.2e-179 631.3 435 76.1
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 7.2e-179 631.3 467 73.2
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 4.6e-178 628.6 418 77.5
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.2e-175 619.8 421 75.3
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 8.2e-175 617.8 407 82.1
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.2e-165 587.4 462 70.1
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 2.0e-165 586.6 583 60.2
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 8.0e-154 548.1 537 60.7
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 7.5e-152 541.6 438 70.1
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.4e-150 537.3 317 87.4
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 5.7e-144 515.4 381 75.3
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.8e-140 502.7 445 66.5
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.8e-137 493.8 299 84.9
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 3.1e-134 483.0 351 70.7
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 4.6e-125 452.6 335 77.6
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.1e-123 448.0 260 89.2
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 7.3e-123 445.3 277 83.4
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 9.5e-123 444.9 553 47.2
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 6.8e-121 438.7 281 82.2
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 8.1e-90 335.5 482 46.9
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.8e-79 300.1 213 70.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 3.5e-77 293.5 187 80.2
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 7.4e-75 285.8 545 42.0
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 1.8e-68 264.6 326 51.5
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 8.7e-68 262.3 211 71.6
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 2.6e-56 224.2 142 80.3
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.5e-54 217.6 170 67.1
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 8.8e-52 209.1 193 58.0
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 4.5e-48 196.8 119 84.0
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 3.6e-45 187.2 127 75.6
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.5e-35 152.9 162 56.2
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.8e-33 148.3 109 79.8
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.3e-33 146.7 170 55.3
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.2e-31 141.4 95 71.6
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.6e-29 135.2 101 74.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 3.7e-26 124.0 78 85.9
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 3.1e-25 120.9 69 87.0
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 4.1e-25 120.6 102 62.7
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 3.5e-24 117.5 79 74.7
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 1.0e-23 115.9 91 64.8
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.0e-19 101.7 61 82.0
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 3.4e-19 100.9 70 77.1
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 3.5e-16 90.9 53 88.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.8e-12 78.6 141 37.6
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 2.0e-11 75.1 58 67.2
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 3.7e-10 70.9 53 66.0
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 3.2e-09 67.8 93 47.3
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.3e-07 62.4 39 82.1
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 6.6e-07 60.1 56 51.8
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 9.5e-06 56.2 65 43.1


User provided reference genes

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