Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 5.5e-72 274.2 143 100.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 2.7e-47 192.2 141 74.5
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 5.4e-43 177.9 141 68.8
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.2e-42 176.8 141 67.4
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 5.9e-42 174.5 142 67.6
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.4e-29 132.1 147 58.5
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 2.9e-28 129.0 137 56.2
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 6.0e-26 121.3 149 53.7
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 3.9e-25 118.6 143 53.1
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 1.1e-24 117.1 142 52.1
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.5e-24 116.7 152 52.0
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 2.5e-24 115.9 148 51.4
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 5.6e-24 114.8 141 53.2
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 9.5e-24 114.0 141 50.4
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.2e-23 113.6 150 50.7
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.6e-23 113.2 150 50.7
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 6.2e-23 111.3 149 50.3
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 6.2e-23 111.3 94 66.0
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.8e-22 109.8 142 54.9
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.8e-22 109.8 109 56.9
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.3e-22 109.4 142 54.2
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 3.1e-22 109.0 143 50.3
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 4.0e-22 108.6 95 63.2
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 6.8e-22 107.8 104 60.6
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 6.8e-22 107.8 99 59.6
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 8.9e-22 107.5 94 64.9
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.5e-21 106.7 142 51.4
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 1.5e-21 106.7 147 51.0
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 5.8e-21 104.8 145 50.3
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 5.8e-21 104.8 94 64.9
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 7.5e-21 104.4 144 52.8
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 7.5e-21 104.4 94 61.7
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.3e-20 103.6 142 53.5
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.7e-20 103.2 114 54.4
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.9e-20 102.4 105 57.1
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 3.7e-20 102.1 116 56.0
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 3.7e-20 102.1 149 49.7
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.9e-20 101.7 147 48.3
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 4.9e-20 101.7 164 48.8
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 6.4e-20 101.3 98 61.2
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 6.4e-20 101.3 142 50.0
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 6.4e-20 101.3 97 59.8
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 8.3e-20 100.9 94 63.8
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-19 100.5 131 52.7
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-19 100.5 131 52.7
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.1e-19 100.5 131 52.7
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.1e-19 100.5 94 62.8
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.4e-19 100.1 131 49.6
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 1.9e-19 99.8 141 50.4
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.9e-19 99.8 145 51.0
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.2e-19 99.0 147 49.7
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 3.2e-19 99.0 141 51.1
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 3.2e-19 99.0 78 71.8
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 4.1e-19 98.6 144 45.8
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.1e-19 98.6 147 49.7
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.1e-19 98.6 147 51.0
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 5.4e-19 98.2 125 49.6
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.6e-18 96.7 124 54.8
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 2.1e-18 96.3 153 50.3
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 2.1e-18 96.3 96 58.3
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 3.5e-18 95.5 99 54.5
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 3.5e-18 95.5 136 47.8
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 3.5e-18 95.5 146 47.3
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 4.6e-18 95.1 142 50.7
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 4.6e-18 95.1 138 47.1
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.0e-17 94.0 78 69.2
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.3e-17 93.6 150 45.3
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.3e-17 93.6 92 58.7
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.7e-17 93.2 147 47.6
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.7e-17 93.2 79 69.6
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 1.7e-17 93.2 116 51.7
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 3.0e-17 92.4 78 70.5
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 3.0e-17 92.4 146 47.9
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.0e-17 91.7 141 48.2
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-16 90.5 109 53.2
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-16 90.5 141 48.2
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.1e-16 90.5 95 57.9
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.5e-16 90.1 79 64.6
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.9e-16 89.7 144 45.8
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 2.5e-16 89.4 99 54.5
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 2.5e-16 89.4 91 59.3
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.3e-16 89.0 84 63.1
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 3.3e-16 89.0 149 45.6
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 4.3e-16 88.6 140 47.9
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 4.3e-16 88.6 103 51.5
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 7.3e-16 87.8 94 57.4
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 9.5e-16 87.4 94 56.4
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 9.5e-16 87.4 141 46.8
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 9.5e-16 87.4 174 40.8
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 2.1e-15 86.3 105 54.3
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.8e-15 85.9 141 44.7
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 4.7e-15 85.1 78 64.1
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 6.2e-15 84.7 79 62.0
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 8.1e-15 84.3 94 55.3
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 8.1e-15 84.3 144 43.1
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 8.1e-15 84.3 96 53.1
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.1e-14 84.0 147 40.8
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.4e-14 83.6 83 61.4
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.8e-14 83.2 108 53.7
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 3.1e-14 82.4 162 42.0
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 8.9e-14 80.9 69 63.8
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 2.0e-13 79.7 114 47.4
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 9.9e-13 77.4 82 57.3
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.3e-12 77.0 104 51.9
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.2e-12 76.3 147 44.2
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 2.9e-12 75.9 70 65.7
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 4.9e-12 75.1 92 53.3
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 4.9e-12 75.1 80 55.0
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 4.9e-12 75.1 142 43.7
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 8.3e-12 74.3 79 58.2
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.1e-11 73.9 110 47.3
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.9e-11 73.2 92 48.9
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 3.2e-11 72.4 83 55.4
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 4.1e-11 72.0 92 51.1
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 7.1e-11 71.2 84 54.8
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 7.1e-11 71.2 93 50.5
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 2.1e-10 69.7 83 54.2
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 2.1e-10 69.7 83 54.2
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 2.7e-10 69.3 61 60.7
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 3.5e-10 68.9 84 53.6
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 4.6e-10 68.6 79 53.2
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 1.0e-09 67.4 86 53.5
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.3e-09 67.0 84 53.6
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.3e-09 67.0 84 53.6
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.3e-09 66.2 83 53.0
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 2.3e-09 66.2 83 53.0
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 2.3e-09 66.2 83 53.0
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 2.3e-09 66.2 83 53.0
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 3.9e-09 65.5 80 51.2
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 3.9e-09 65.5 70 58.6
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.9e-08 63.2 68 58.8
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 5.6e-08 61.6 133 36.8
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 7.3e-08 61.2 80 47.5
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 7.3e-08 61.2 81 49.4
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.2e-07 60.5 144 41.0
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.1e-06 57.4 62 56.5


User provided reference genes

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