Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.6e-202 708.0 342 100.0
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.8e-172 608.2 342 86.0
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.8e-169 599.4 338 84.9
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.2e-162 576.6 343 81.9
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 5.7e-160 567.8 408 71.1
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 2.4e-158 562.4 349 77.9
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.9e-156 555.1 350 77.7
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.9e-156 555.1 350 77.7
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 3.9e-156 555.1 345 78.6
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.6e-154 549.7 342 78.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.8e-153 546.2 351 75.5
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.8e-153 546.2 346 76.9
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.0e-152 542.7 346 76.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.2e-151 539.3 349 75.4
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.2e-151 539.3 346 76.0
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.9e-151 538.9 360 74.7
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.9e-150 536.2 340 75.9
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.4e-150 534.6 350 73.7
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.2e-149 533.5 348 75.9
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.5e-149 531.9 371 72.5
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 5.0e-148 528.1 358 73.5
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 6.6e-148 527.7 347 74.6
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 2.5e-147 525.8 346 75.1
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 7.3e-147 524.2 337 75.1
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 9.5e-147 523.9 348 74.7
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 9.5e-147 523.9 346 74.6
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.2e-146 523.5 357 71.7
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.6e-146 523.1 347 74.9
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.1e-145 520.4 342 75.4
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.1e-145 520.4 351 73.8
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.3e-145 519.2 343 74.6
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 6.8e-145 517.7 345 72.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 8.9e-145 517.3 358 72.6
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.5e-144 516.5 348 73.3
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.0e-144 516.2 346 72.8
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.6e-144 515.8 343 74.3
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 3.4e-144 515.4 344 75.3
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.8e-144 514.6 376 69.9
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 7.5e-144 514.2 364 71.2
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.2e-143 512.7 338 74.0
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.9e-143 511.5 361 70.6
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 6.4e-143 511.1 372 69.6
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 8.3e-143 510.8 352 72.2
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.1e-142 510.4 341 74.2
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.1e-142 510.4 337 73.0
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.1e-142 510.4 366 71.0
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.4e-142 510.0 341 74.2
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.9e-142 509.6 374 67.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 4.1e-142 508.4 351 72.1
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 5.4e-142 508.1 365 69.9
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 7.1e-142 507.7 342 74.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 7.1e-142 507.7 336 75.6
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 9.2e-142 507.3 360 71.1
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.1e-141 506.1 362 68.5
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 7.8e-141 504.2 348 72.1
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.3e-140 503.4 355 71.0
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.7e-140 503.1 356 69.9
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.9e-140 501.9 356 70.2
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.1e-140 501.5 354 69.5
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 6.6e-140 501.1 361 69.3
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.6e-140 501.1 354 69.5
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.1e-139 500.4 341 70.7
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 3.3e-139 498.8 344 73.3
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.3e-139 498.8 361 69.3
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 5.6e-139 498.0 357 70.0
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 7.3e-139 497.7 343 72.6
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 7.3e-139 497.7 339 73.2
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 7.3e-139 497.7 354 69.8
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.2e-138 496.9 514 54.3
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.2e-138 496.9 377 67.4
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.1e-138 496.1 362 67.7
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 3.6e-138 495.4 354 67.5
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 3.6e-138 495.4 362 70.2
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.7e-138 495.0 354 68.9
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.2e-138 494.6 353 69.7
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.1e-137 493.8 327 74.6
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.1e-137 493.8 370 69.5
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.4e-137 492.7 357 69.5
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 6.8e-137 491.1 344 73.0
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 6.8e-137 491.1 347 71.5
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 5.8e-136 488.0 357 66.9
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.7e-135 486.5 342 69.3
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.8e-135 485.3 343 70.0
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 4.9e-135 485.0 352 66.8
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-133 480.3 343 69.4
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 3.5e-133 478.8 352 68.5
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.3e-132 476.9 343 69.1
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.9e-132 475.3 328 70.7
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 5.1e-132 474.9 346 68.5
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 8.6e-132 474.2 346 68.8
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 8.6e-132 474.2 353 68.6
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 2.5e-131 472.6 350 66.9
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 7.3e-131 471.1 353 68.6
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 7.3e-131 471.1 358 67.0
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.1e-130 469.5 353 68.0
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.6e-130 468.8 348 67.8
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.6e-130 468.8 348 67.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.6e-130 468.8 350 67.1
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.1e-129 467.2 350 67.1
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.4e-129 466.1 373 66.2
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 9.0e-129 464.2 353 67.4
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.0e-128 463.0 345 67.0
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.4e-128 461.8 361 64.8
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 2.2e-127 459.5 350 65.7
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.9e-127 459.1 342 67.0
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 4.9e-127 458.4 336 70.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.2e-126 455.7 347 65.1
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 4.2e-126 455.3 345 67.5
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.2e-126 455.3 374 61.2
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 5.4e-126 454.9 345 67.2
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 7.1e-126 454.5 366 61.5
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 9.3e-126 454.1 370 64.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 3.5e-125 452.2 342 66.4
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 7.8e-125 451.1 355 65.4
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.3e-124 450.3 345 66.7
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.9e-124 448.7 348 66.4
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 6.2e-122 441.4 334 67.7
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.1e-121 440.7 353 64.0
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-121 440.3 342 65.8
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.2e-120 437.2 361 62.9
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.3e-119 433.7 312 67.9
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.2e-119 433.0 308 70.5
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 8.4e-119 431.0 374 61.2
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 4.2e-118 428.7 331 65.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 9.3e-118 427.6 427 55.0
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 2.7e-117 426.0 353 61.8
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 4.6e-117 425.2 326 69.6
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.9e-116 422.2 327 67.3
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.8e-114 415.2 409 54.8
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 4.6e-109 398.7 354 58.2
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.1e-105 386.0 324 60.2
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.6e-104 382.9 357 56.9
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 6.9e-97 358.2 345 54.5
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.9e-95 352.8 336 55.4
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.7e-85 318.9 242 64.5
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 7.9e-85 318.2 392 47.2
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 7.4e-83 311.6 362 47.2
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.1e-77 292.0 297 55.6
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 8.0e-77 291.6 164 80.5
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.1e-73 279.3 376 42.6
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.6e-72 276.6 359 44.6
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 5.2e-68 262.3 237 54.0
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.6e-67 260.0 392 39.3
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 9.7e-67 258.1 341 43.1
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 4.1e-65 252.7 178 74.2
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-63 247.7 243 57.6
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-63 247.7 243 57.6
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.9e-63 246.5 210 62.9
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.0e-63 245.7 211 63.5
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 2.1e-61 240.4 235 61.7
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 2.7e-56 223.4 187 63.1
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.6e-48 197.6 134 73.9
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.1e-46 191.4 128 67.2
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 5.6e-38 162.5 102 74.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-36 157.9 377 31.8
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.9e-34 150.2 122 60.7
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 9.2e-33 145.2 334 32.9
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-28 131.0 72 77.8
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.3e-15 88.2 63 68.3
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 8.7e-15 85.5 78 57.7
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.6e-08 64.7 33 75.8


User provided reference genes

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