Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.0e-207 726.5 364 100.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 6.3e-64 248.8 139 82.0
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 8.2e-64 248.4 156 72.4
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 2.4e-63 246.9 152 73.7
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 9.1e-63 245.0 129 85.3
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.0e-61 241.5 129 84.5
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.0e-61 241.5 179 69.3
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.0e-61 241.5 179 69.3
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 1.5e-60 237.7 119 88.2
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 2.5e-60 236.9 125 84.0
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 3.2e-60 236.5 140 78.6
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 4.2e-60 236.1 141 75.2
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.5e-60 235.7 141 74.5
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 5.5e-60 235.7 122 82.8
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 7.2e-60 235.3 120 87.5
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 9.4e-60 235.0 125 82.4
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.2e-59 234.6 123 85.4
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.2e-59 234.6 126 82.5
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 1.2e-59 234.6 141 74.5
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.2e-59 234.6 125 84.0
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.2e-59 234.6 129 82.2
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 1.6e-59 234.2 126 81.7
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.6e-59 234.2 138 74.6
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 2.1e-59 233.8 141 74.5
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.1e-59 233.8 141 74.5
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.1e-59 233.8 135 76.3
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 2.1e-59 233.8 144 72.9
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 2.1e-59 233.8 129 80.6
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.1e-59 233.8 171 64.9
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.1e-59 233.8 119 84.9
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 2.1e-59 233.8 125 83.2
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 2.1e-59 233.8 129 82.2
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 2.1e-59 233.8 125 81.6
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.7e-59 233.4 141 73.8
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 2.7e-59 233.4 141 73.8
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 4.7e-59 232.6 151 69.5
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 4.7e-59 232.6 124 81.5
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 6.1e-59 232.3 121 82.6
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 6.1e-59 232.3 129 81.4
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.4e-58 231.1 148 72.3
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 1.8e-58 230.7 123 82.1
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.8e-58 230.7 127 80.3
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 2.3e-58 230.3 124 81.5
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 2.3e-58 230.3 121 86.0
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 2.3e-58 230.3 126 79.4
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 2.3e-58 230.3 123 82.1
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 3.0e-58 229.9 119 84.9
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 3.9e-58 229.6 126 81.0
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 3.9e-58 229.6 119 84.0
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.9e-58 229.6 187 61.5
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 3.9e-58 229.6 187 61.5
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 5.2e-58 229.2 137 77.4
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 8.8e-58 228.4 122 82.0
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.1e-57 228.0 123 81.3
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.5e-57 227.6 117 83.8
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.0e-57 227.3 137 75.2
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 2.0e-57 227.3 123 79.7
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 3.3e-57 226.5 136 73.5
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 3.3e-57 226.5 131 78.6
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 3.3e-57 226.5 123 82.1
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 3.3e-57 226.5 124 79.8
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 4.4e-57 226.1 123 78.9
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 5.7e-57 225.7 123 79.7
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 2.2e-56 223.8 125 80.0
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 3.7e-56 223.0 131 77.1
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 4.8e-56 222.6 128 78.9
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 6.3e-56 222.2 124 77.4
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 8.2e-56 221.9 122 80.3
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 1.8e-55 220.7 133 75.2
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.8e-55 220.7 136 75.0
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 3.1e-55 219.9 119 79.8
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 4.1e-55 219.5 141 73.0
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 5.3e-55 219.2 140 70.7
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 9.1e-55 218.4 169 61.5
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 9.1e-55 218.4 132 74.2
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 1.2e-54 218.0 117 80.3
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.6e-54 217.6 122 78.7
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.0e-54 217.2 143 69.9
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 2.0e-54 217.2 136 72.1
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 4.5e-54 216.1 151 66.2
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 4.5e-54 216.1 117 79.5
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 3.8e-53 213.0 119 77.3
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.1e-52 211.5 194 55.7
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.5e-52 210.3 138 68.1
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 4.2e-52 209.5 134 69.4
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 4.2e-52 209.5 134 69.4
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 6.1e-51 205.7 102 90.2
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 2.3e-50 203.8 193 54.4
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 2.3e-50 203.8 117 72.6
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 2.2e-48 197.2 160 61.2
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.1e-47 194.9 138 65.2
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 4.1e-47 193.0 124 66.9
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.2e-46 191.4 116 72.4
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 2.0e-46 190.7 112 73.2
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 3.5e-46 189.9 118 68.6
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 3.5e-46 189.9 121 73.6
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.3e-45 188.0 123 71.5
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 1.7e-45 187.6 102 82.4
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.7e-43 180.3 132 66.7
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 3.4e-41 173.3 123 63.4
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 2.2e-40 170.6 163 53.4
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 3.7e-40 169.9 112 59.8
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 3.7e-40 169.9 94 79.8
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 6.3e-40 169.1 106 72.6
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 4.1e-39 166.4 136 56.6
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 3.5e-38 163.3 95 74.7
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 5.9e-38 162.5 109 61.5
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.9e-37 160.2 88 77.3
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.1e-36 158.3 125 60.8
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.1e-31 141.7 102 58.8
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 2.3e-29 134.0 107 62.6
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 1.5e-28 131.3 88 70.5
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 1.6e-27 127.9 106 49.1
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 2.1e-27 127.5 63 87.3
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.0e-25 120.9 121 49.6
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.6e-25 120.6 96 58.3
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 2.6e-25 120.6 63 85.7
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.4e-25 119.8 62 85.5
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 9.8e-25 118.6 65 81.5
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 1.7e-24 117.9 96 53.1
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.2e-24 117.5 57 86.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 4.9e-24 116.3 114 47.4
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 6.4e-24 115.9 100 46.0
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.4e-23 114.0 60 78.3
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 2.4e-23 114.0 65 76.9
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 4.1e-23 113.2 194 39.2
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 4.6e-22 109.8 100 46.0
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 4.0e-18 96.7 104 45.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 5.2e-18 96.3 99 38.4
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 3.3e-12 77.0 41 85.4
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 3.3e-12 77.0 42 73.8
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.6e-11 74.7 115 37.4
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 8.1e-11 72.4 40 82.5
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 8.1e-11 72.4 40 82.5
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 6.8e-10 69.3 41 70.7
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 8.9e-10 68.9 34 79.4
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 8.9e-10 68.9 34 79.4
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 3.4e-09 67.0 42 64.3
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 5.4e-07 59.7 110 37.3


User provided reference genes

Program Settings