Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 2.4e-292 1008.4 633 100.0
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.6e-126 457.6 673 50.4
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 8.0e-123 445.3 860 45.1
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 2.9e-117 426.8 741 50.3
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 9.1e-111 405.2 679 47.1
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 1.3e-104 384.8 819 43.3
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 8.3e-104 382.1 733 44.5
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 1.6e-102 377.9 296 91.6
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.3e-101 374.0 810 42.2
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 8.6e-101 372.1 808 41.6
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 2.3e-98 364.0 815 42.5
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 4.9e-96 356.3 797 39.6
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.1e-95 355.1 877 40.3
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.4e-95 354.8 429 53.8
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.4e-95 354.0 864 37.5
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 9.2e-95 352.1 795 41.6
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 3.5e-94 350.1 776 46.4
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 5.9e-94 349.4 426 53.5
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 2.3e-93 347.4 792 38.8
SGA_v2.0_scaffold225G43014 Striga asiatica HOM05D006481 ORTHO05D008160 3.9e-93 346.7 264 98.1
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 5.0e-93 346.3 431 53.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 5.0e-93 346.3 861 38.9
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 4.7e-91 339.7 426 51.6
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 4.7e-91 339.7 440 50.0
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 6.2e-91 339.3 684 45.0
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.0e-89 334.3 788 39.3
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 2.0e-89 334.3 836 41.0
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 7.5e-89 332.4 622 42.3
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 9.8e-89 332.0 445 49.0
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 3.7e-88 330.1 456 48.7
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 6.4e-88 329.3 727 44.6
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 6.4e-88 329.3 762 40.0
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 1.9e-87 327.8 698 41.1
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 4.1e-87 326.6 746 45.2
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 4.1e-87 326.6 784 40.3
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 7.0e-87 325.9 449 49.2
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 4.6e-86 323.2 452 48.2
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 4.6e-86 323.2 831 39.2
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 6.0e-86 322.8 741 38.3
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 6.6e-85 319.3 755 41.3
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 8.6e-85 318.9 742 44.1
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.1e-84 318.5 845 36.0
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.9e-84 317.8 680 45.0
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 2.5e-84 317.4 773 40.6
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.5e-84 317.4 651 42.1
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.5e-84 317.4 811 37.2
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 4.3e-84 316.6 859 36.4
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 4.3e-84 316.6 731 45.8
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.2e-83 315.1 742 38.7
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 1.6e-83 314.7 934 34.4
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.7e-83 313.2 728 39.3
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.1e-82 312.0 761 39.8
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.4e-82 311.6 788 37.4
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 6.8e-82 309.3 417 51.1
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 8.9e-82 308.9 825 36.7
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 3.4e-81 307.0 794 37.0
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 9.8e-81 305.4 460 47.2
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.3e-80 305.1 721 41.2
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.3e-80 305.1 832 36.7
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.7e-80 304.7 832 36.7
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.7e-80 304.7 450 46.7
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 2.2e-80 304.3 828 38.9
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 2.2e-80 304.3 448 47.8
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.9e-80 303.9 448 47.3
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 4.9e-80 303.1 346 55.5
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 4.9e-80 303.1 768 40.2
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 8.3e-80 302.4 835 38.0
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.1e-79 302.0 777 37.8
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 3.2e-79 300.4 688 40.3
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.1e-79 300.1 652 41.3
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.2e-78 298.5 712 41.3
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 3.5e-78 297.0 435 46.0
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.3e-77 295.0 780 37.4
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 2.3e-77 294.3 623 44.6
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 3.9e-77 293.5 441 47.4
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 6.8e-74 282.7 443 44.7
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 8.9e-74 282.3 443 44.5
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.2e-73 282.0 353 53.3
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 3.8e-72 276.9 426 45.3
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 2.7e-70 270.8 806 38.7
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.5e-70 270.4 778 36.5
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 7.8e-70 269.2 441 42.2
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 1.0e-69 268.9 764 37.8
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 3.0e-69 267.3 443 41.1
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 1.9e-68 264.6 428 43.9
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 3.3e-68 263.8 433 44.6
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 2.4e-66 257.7 438 42.9
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 2.0e-65 254.6 432 43.1
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 2.0e-65 254.6 402 45.0
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 1.7e-64 251.5 695 40.7
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.1e-63 248.8 397 45.1
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 4.2e-63 246.9 403 45.2
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.1e-59 234.6 816 31.4
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.1e-58 232.3 730 36.7
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 4.0e-58 230.3 408 41.7
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.9e-56 224.2 346 46.2
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 2.1e-46 191.4 669 38.6
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 2.4e-42 177.9 323 44.0
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 2.0e-41 174.9 520 44.0
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.1e-38 164.9 380 36.1
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.1e-38 164.9 380 36.1
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.4e-34 151.4 202 49.5
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 3.4e-33 147.5 353 36.0
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 1.0e-32 146.0 248 41.5
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 2.2e-32 144.8 147 58.5
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 6.7e-21 106.7 128 52.3
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 2.2e-19 101.7 201 36.8
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 9.1e-18 96.3 198 39.4
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.3e-11 75.9 94 52.1
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 8.2e-11 73.2 512 28.9
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.8e-10 72.0 118 41.5
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 2.4e-10 71.6 130 50.0
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 1.7e-08 65.5 107 39.3
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 1.9e-07 62.0 43 65.1
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 8.0e-06 56.6 120 39.2


User provided reference genes

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