Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.8e-167 592.4 287 100.0
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 8.3e-136 487.3 284 82.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 9.2e-135 483.8 285 80.0
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 8.3e-128 460.7 327 68.8
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 8.3e-128 460.7 327 68.8
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 6.8e-122 441.0 285 73.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.2e-120 436.0 286 72.7
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.2e-120 436.0 285 73.3
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 2.9e-120 435.6 284 73.2
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 4.9e-120 434.9 285 71.6
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 8.3e-120 434.1 283 72.4
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 8.3e-120 434.1 285 71.9
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.4e-119 433.3 288 73.3
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.9e-119 433.0 286 71.7
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 4.1e-119 431.8 286 71.7
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 9.2e-119 430.6 285 73.0
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.6e-118 429.9 288 71.9
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.1e-118 429.5 286 73.1
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.1e-118 429.5 286 73.1
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.0e-118 427.9 285 70.9
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.3e-117 426.8 286 71.3
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.3e-117 426.8 280 72.1
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.9e-117 425.2 288 70.1
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.9e-117 425.2 285 69.8
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.9e-117 425.2 285 70.9
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.6e-117 424.5 285 71.9
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.1e-116 423.7 285 69.5
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.9e-116 422.9 293 68.3
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 2.5e-116 422.5 286 70.6
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.3e-116 421.8 288 69.4
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 4.3e-116 421.8 288 69.4
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 7.3e-116 421.0 286 70.3
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.2e-115 420.2 286 70.3
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.1e-115 419.5 284 70.8
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 2.1e-115 419.5 283 71.7
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 2.8e-115 419.1 285 69.8
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 2.8e-115 419.1 286 70.6
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.7e-115 418.3 286 70.6
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 6.2e-115 417.9 286 70.6
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 8.1e-115 417.5 284 68.3
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.8e-114 416.4 285 70.5
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.0e-114 415.2 286 69.9
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 5.2e-114 414.8 323 62.5
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.2e-113 413.7 286 69.2
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.5e-113 413.3 284 69.0
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.5e-113 413.3 286 70.3
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 4.4e-113 411.8 286 69.2
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 4.4e-113 411.8 286 69.9
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.4e-113 411.8 285 69.8
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 5.8e-113 411.4 286 69.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 5.8e-113 411.4 286 69.2
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 7.5e-113 411.0 286 69.6
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 7.5e-113 411.0 286 68.5
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 7.5e-113 411.0 285 70.2
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 9.9e-113 410.6 286 70.3
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.7e-112 409.8 294 68.7
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.2e-112 409.5 284 70.1
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.7e-112 408.7 284 68.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 6.4e-112 407.9 284 69.4
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.4e-111 406.8 289 68.9
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.9e-111 406.4 285 69.5
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 4.1e-111 405.2 284 71.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.4e-111 404.8 287 70.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 7.1e-111 404.4 286 68.5
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.2e-110 403.7 286 69.2
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.7e-110 402.5 287 69.7
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 3.5e-110 402.1 286 67.1
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.7e-109 399.8 286 68.2
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.3e-109 399.4 287 68.3
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.0e-109 399.1 275 70.2
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 8.6e-109 397.5 323 62.8
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 8.6e-109 397.5 284 66.5
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.1e-108 397.1 287 67.6
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.9e-108 396.4 285 68.4
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 5.6e-108 394.8 287 68.3
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 5.6e-108 394.8 294 66.0
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 7.3e-108 394.4 286 68.5
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.2e-107 393.7 286 68.2
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.6e-107 393.3 286 68.2
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 4.7e-107 391.7 291 67.7
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 4.7e-107 391.7 291 66.7
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 1.1e-106 390.6 286 67.8
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.4e-106 390.2 254 74.8
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 5.2e-106 388.3 303 65.3
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 5.2e-106 388.3 287 65.9
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.2e-105 387.1 287 66.9
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.0e-105 386.3 286 65.7
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.0e-105 386.3 286 65.7
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.6e-105 386.0 286 66.8
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.6e-105 386.0 285 65.6
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 4.4e-105 385.2 239 75.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 5.8e-105 384.8 253 72.3
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 7.6e-105 384.4 286 66.8
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 2.9e-104 382.5 286 66.1
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.2e-102 377.1 253 73.1
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.2e-102 377.1 254 73.6
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.6e-102 376.7 290 63.8
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 6.0e-102 374.8 283 67.1
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 5.1e-101 371.7 283 64.3
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.3e-100 369.0 285 64.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.6e-99 366.7 285 63.2
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 8.1e-99 364.4 283 62.5
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.8e-98 363.2 254 69.3
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 3.1e-98 362.5 289 63.3
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.7e-96 356.7 254 69.3
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.4e-95 353.6 284 62.0
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.2e-94 350.5 286 60.5
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 4.8e-91 338.6 227 70.5
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 2.6e-89 332.8 279 59.5
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 4.5e-89 332.0 241 65.6
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.4e-87 327.0 284 58.8
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 3.2e-87 325.9 287 56.1
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 5.4e-87 325.1 208 76.4
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.1e-84 317.4 283 57.6
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 4.3e-84 315.5 255 63.1
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.4e-82 309.7 282 54.6
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.1e-79 300.8 284 53.5
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.9e-79 300.1 263 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 2.4e-74 283.1 237 59.1
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 5.1e-69 265.4 168 72.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.3e-68 262.3 228 62.3
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 3.1e-66 256.1 187 67.9
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 3.6e-54 216.1 298 44.6
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 5.1e-53 212.2 262 44.3
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.1e-44 184.5 130 68.5
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 7.0e-42 175.3 149 61.1
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 7.0e-42 175.3 273 37.7
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.9e-39 167.2 152 57.9
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 2.5e-39 166.8 149 59.1
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.2e-36 157.9 147 57.1
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.3e-35 154.5 137 59.1
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 5.5e-31 139.0 113 60.2
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 3.0e-29 133.3 362 29.0
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.2e-28 131.3 266 31.6
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 1.8e-26 124.0 93 65.6
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 2.3e-24 117.1 168 39.9
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 2.5e-23 113.6 82 64.6
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 7.2e-23 112.1 99 57.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.2e-22 111.3 115 49.6
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 3.4e-20 103.2 88 61.4
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.1e-18 96.3 71 63.4
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 5.9e-17 92.4 61 62.3
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.3e-16 91.3 67 64.2
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-13 81.6 60 71.7
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.4e-13 81.3 108 44.4
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 4.4e-12 76.3 87 47.1
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 2.2e-11 73.9 87 47.1
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.2e-11 73.9 214 29.9
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 4.9e-11 72.8 83 48.2
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 4.9e-11 72.8 83 48.2
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.4e-11 72.4 46 67.4
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.4e-11 72.4 46 65.2
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 8.3e-11 72.0 180 28.9
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-10 71.6 46 67.4
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-10 71.6 46 67.4
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.4e-10 71.2 139 30.9
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.4e-10 70.5 56 66.1
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 6.6e-08 62.4 124 37.9
RcHm_v2.0_Chr6g0257511 Rosa chinensis HOM05D004481 ORTHO05D005350 2.8e-06 57.0 53 52.8
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.7e-06 56.2 43 69.8


User provided reference genes

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