Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 7.4e-270 933.3 489 100.0
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.7e-205 719.5 489 75.3
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 3.1e-183 645.6 494 67.2
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 3.0e-178 629.0 437 70.0
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 5.9e-174 614.8 437 68.2
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.0e-173 614.0 439 69.0
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 8.5e-173 610.9 437 70.7
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 3.2e-172 609.0 430 70.7
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.6e-171 606.7 436 70.2
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 2.7e-171 605.9 437 69.1
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 7.9e-171 604.4 438 68.7
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 3.0e-170 602.4 443 68.6
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 5.1e-170 601.7 435 68.3
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 8.8e-170 600.9 435 68.0
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 2.5e-169 599.4 435 68.3
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 5.7e-169 598.2 442 67.2
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.3e-168 597.0 429 69.2
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 2.2e-168 596.3 436 68.3
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 2.8e-168 595.9 435 67.8
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.7e-168 595.5 427 68.9
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 3.1e-167 592.4 428 69.4
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 9.1e-167 590.9 435 68.0
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.5e-166 590.1 435 68.7
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 3.8e-165 585.5 429 69.0
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 6.5e-165 584.7 437 66.4
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 8.5e-165 584.3 435 68.3
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 8.5e-165 584.3 435 67.6
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.4e-164 583.6 437 66.4
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 7.2e-164 581.3 435 67.8
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 4.7e-163 578.6 491 62.1
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.0e-162 577.4 456 65.6
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 6.7e-162 574.7 430 67.0
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 2.0e-161 573.2 409 69.7
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 5.7e-161 571.6 435 65.5
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 9.7e-161 570.9 436 66.1
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 1.3e-160 570.5 430 64.9
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 1.3e-160 570.5 435 65.3
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.2e-160 569.7 483 62.1
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 2.8e-160 569.3 435 65.5
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 1.4e-159 567.0 435 65.1
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.8e-159 566.6 418 67.2
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.4e-159 566.2 444 65.8
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.1e-159 565.5 418 67.2
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 2.6e-158 562.8 446 62.8
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 2.9e-157 559.3 417 65.0
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 3.8e-157 558.9 454 62.6
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 1.5e-156 557.0 435 64.8
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 6.1e-155 551.6 439 63.3
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 6.1e-155 551.6 405 68.6
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 8.0e-155 551.2 437 63.2
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.4e-154 550.4 437 63.2
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 1.8e-154 550.1 438 61.2
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.8e-154 550.1 450 62.9
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 2.3e-154 549.7 435 65.1
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 2.3e-154 549.7 406 68.2
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 4.4e-153 545.4 428 63.8
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 4.4e-153 545.4 434 65.0
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 9.7e-153 544.3 431 63.6
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 2.8e-152 542.7 437 62.7
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 8.2e-152 541.2 438 60.5
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.4e-151 540.4 416 65.4
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.4e-151 540.4 424 64.6
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 2.4e-151 539.7 444 61.5
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 3.1e-151 539.3 470 57.0
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 2.0e-150 536.6 442 61.5
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 5.9e-150 535.0 413 65.4
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.7e-149 533.5 422 62.8
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 4.2e-148 528.9 478 61.7
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.1e-147 526.6 427 62.5
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 2.1e-147 526.6 437 60.9
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 6.1e-147 525.0 473 59.6
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 2.3e-146 523.1 448 62.1
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 4.0e-146 522.3 498 55.4
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 2.0e-145 520.0 437 60.6
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.0e-145 520.0 450 60.7
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.4e-143 513.8 454 59.0
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 2.7e-142 509.6 494 56.7
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 5.9e-142 508.4 413 62.7
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 5.9e-142 508.4 437 62.2
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.1e-140 504.2 435 60.2
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.8e-135 486.9 421 60.1
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.8e-135 486.9 485 54.6
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 7.0e-135 485.0 361 67.0
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 2.7e-134 483.0 365 65.8
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.7e-133 480.3 439 57.2
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.3e-133 479.9 368 65.8
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 5.0e-133 478.8 394 61.2
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 3.3e-132 476.1 385 62.1
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 2.3e-130 469.9 567 46.7
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 7.5e-129 464.9 387 60.5
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 4.6e-126 455.7 436 53.0
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.1e-124 451.1 418 56.5
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 8.0e-123 444.9 349 63.9
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 5.2e-122 442.2 435 51.0
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 2.4e-119 433.3 435 50.8
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 1.0e-117 427.9 461 47.5
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 6.4e-112 408.7 331 63.4
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.4e-106 391.0 316 63.0
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 9.2e-103 378.3 411 48.2
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 3.4e-89 333.2 270 65.2
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 3.3e-84 316.6 272 62.1
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 4.5e-81 306.2 220 70.9
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 1.3e-77 294.7 192 71.4
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 7.4e-76 288.9 184 73.4
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 4.2e-71 273.1 301 48.2
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 4.3e-68 263.1 286 53.1
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.3e-68 263.1 239 59.4
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.2e-59 234.2 180 66.1
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 1.2e-57 228.4 181 63.5
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 7.0e-42 176.0 282 37.6
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 6.5e-40 169.5 104 76.9
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 1.2e-38 165.2 133 60.9
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 6.1e-38 162.9 122 62.3
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 6.1e-38 162.9 96 78.1
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 2.0e-33 147.9 192 44.3
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 3.8e-32 143.7 97 63.9
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 8.0e-30 136.0 134 55.2
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 2.6e-28 131.0 168 44.0
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 6.3e-27 126.3 295 35.3
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 8.3e-27 125.9 109 56.0
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 1.1e-23 115.5 105 53.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 4.4e-20 103.6 98 51.0
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 6.3e-19 99.8 458 25.3
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 8.3e-19 99.4 213 32.9
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 2.1e-14 84.7 109 43.1
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.7e-14 83.6 58 69.0
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 3.0e-13 80.9 126 36.5
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 5.2e-13 80.1 53 67.9
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.7e-11 75.1 40 87.5
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 3.2e-10 70.9 305 26.6
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 2.7e-09 67.8 52 55.8
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 1.0e-08 65.9 52 53.8
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 8.6e-08 62.8 58 55.2
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 8.6e-08 62.8 33 84.8
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 1.6e-06 58.5 50 56.0


User provided reference genes

Program Settings