Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.6e-222 775.0 381 100.0
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.7e-144 516.5 445 62.9
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.2e-144 516.2 445 62.7
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 4.9e-144 515.0 486 57.8
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 6.4e-144 514.6 511 57.1
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 4.2e-143 511.9 503 55.9
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.0e-141 505.8 514 54.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.4e-138 496.9 507 55.0
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 3.1e-138 495.7 509 54.0
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.5e-137 493.4 511 54.2
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.6e-137 491.1 489 54.8
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 4.9e-136 488.4 451 58.8
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 8.4e-136 487.6 437 59.0
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.4e-135 486.9 508 54.3
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.4e-135 486.9 514 53.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.9e-135 486.5 514 53.1
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.2e-135 485.3 514 53.1
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 5.5e-135 485.0 510 52.7
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.1e-135 484.6 489 54.2
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.1e-135 484.6 444 59.2
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.2e-134 483.8 513 53.2
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.6e-134 483.4 453 58.7
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 2.7e-134 482.6 490 54.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.5e-134 482.3 448 58.3
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 6.0e-134 481.5 509 52.5
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 7.9e-134 481.1 509 52.5
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 7.9e-134 481.1 452 58.4
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.0e-133 480.7 494 54.0
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.0e-133 480.7 437 58.8
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-133 480.3 437 58.1
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.8e-133 479.9 439 58.3
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.8e-133 479.9 509 53.2
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 2.3e-133 479.6 437 58.1
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.3e-133 479.6 437 58.1
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.3e-133 479.6 445 58.0
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.0e-133 479.2 437 58.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.0e-133 479.2 499 52.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 6.7e-133 478.0 491 54.0
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 6.7e-133 478.0 491 54.0
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.5e-132 476.9 513 51.5
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.5e-132 476.1 504 52.8
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 3.3e-132 475.7 439 57.9
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 3.3e-132 475.7 451 57.2
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.3e-132 475.7 503 52.9
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 4.3e-132 475.3 437 57.7
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 5.6e-132 474.9 490 53.9
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 5.6e-132 474.9 438 58.0
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 7.4e-132 474.6 503 52.9
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 9.6e-132 474.2 437 57.4
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.6e-131 473.4 490 53.9
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.6e-131 473.4 437 57.4
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.6e-131 473.4 507 52.5
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.1e-131 473.0 440 57.5
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.8e-131 472.6 437 58.1
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 2.8e-131 472.6 488 52.0
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 2.8e-131 472.6 501 53.3
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.8e-131 472.6 505 51.9
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.8e-131 472.6 450 56.9
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-131 472.2 437 58.1
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 3.7e-131 472.2 509 52.3
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 6.2e-131 471.5 437 58.1
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 6.2e-131 471.5 505 52.9
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.1e-130 469.2 509 52.1
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 5.3e-130 468.4 506 52.4
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.2e-129 467.2 473 54.5
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.2e-129 467.2 443 56.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.5e-129 466.8 447 56.4
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.5e-129 466.8 499 53.3
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.0e-129 466.5 513 51.5
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.6e-129 466.1 468 54.5
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 3.4e-129 465.7 503 50.7
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 5.8e-129 464.9 508 51.4
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.7e-128 463.4 452 56.0
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 4.9e-128 461.8 508 49.8
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 8.4e-128 461.1 513 49.3
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.9e-127 459.9 506 51.6
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.5e-127 459.5 489 52.8
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 2.5e-127 459.5 446 56.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 5.5e-127 458.4 503 50.9
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 7.1e-127 458.0 441 55.6
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 9.3e-127 457.6 444 55.4
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.6e-126 456.8 446 54.3
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.6e-126 456.8 489 52.4
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 2.1e-126 456.4 442 55.0
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.0e-125 454.1 444 54.1
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 3.9e-125 452.2 510 50.8
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 8.7e-125 451.1 444 55.0
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 8.7e-125 451.1 446 54.9
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.5e-124 450.3 440 55.2
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.9e-124 449.9 510 49.6
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.9e-124 449.9 494 52.0
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.5e-124 449.5 548 48.9
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 4.3e-124 448.7 465 52.5
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 4.3e-124 448.7 464 52.6
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 5.7e-124 448.4 515 49.1
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.8e-123 446.0 539 49.0
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.8e-123 446.0 450 54.0
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 8.2e-123 444.5 539 48.8
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 2.4e-122 443.0 496 50.2
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.0e-120 437.6 506 50.0
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.2e-120 436.4 446 54.3
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 2.2e-120 436.4 450 53.8
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 5.5e-119 431.8 442 53.8
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 6.1e-118 428.3 446 52.0
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.0e-117 427.6 487 50.9
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.8e-117 426.8 475 50.3
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.5e-116 423.7 502 50.4
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 5.7e-116 421.8 452 52.4
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.3e-115 420.6 601 44.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.7e-115 420.2 502 49.4
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 8.2e-115 417.9 583 43.6
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.4e-114 417.2 506 48.8
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.4e-114 417.2 523 48.6
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 3.4e-113 412.5 447 51.9
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 5.9e-113 411.8 501 46.9
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 2.2e-112 409.8 471 48.8
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 5.0e-112 408.7 470 48.7
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 8.5e-112 407.9 459 50.8
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.6e-108 396.4 390 54.6
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 9.7e-108 394.4 455 49.0
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 5.3e-106 388.7 466 47.4
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.9e-103 380.2 394 52.3
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.2e-102 377.5 568 42.6
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.2e-96 356.7 403 50.1
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 4.7e-94 349.0 596 39.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 8.8e-93 344.7 415 46.5
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 3.1e-90 336.3 451 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 4.1e-90 335.9 460 42.2
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-88 330.5 404 47.5
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 6.1e-86 322.0 484 39.7
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 2.8e-75 286.6 426 41.8
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.3e-72 277.7 186 75.8
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 5.2e-69 265.8 222 64.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.1e-61 241.5 273 50.2
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 6.8e-61 238.8 247 56.7
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 3.7e-59 233.0 172 64.5
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.1e-55 221.5 193 58.5
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.9e-55 220.7 172 62.2
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.1e-53 214.9 212 54.7
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 8.9e-53 211.8 221 53.8
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 3.9e-48 196.4 138 71.0
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.2e-41 174.9 135 64.4
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.3e-35 154.8 106 74.5
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.4e-29 134.8 155 46.5
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 9.9e-28 128.6 70 84.3
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.2e-26 123.6 108 63.0
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.0e-25 119.4 62 93.5
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 5.6e-23 112.8 149 40.9
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 7.4e-23 112.5 149 40.9
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.0e-16 92.0 157 29.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.7e-16 89.4 181 35.4
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.9e-15 87.8 181 34.8
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 6.2e-14 82.8 113 45.1
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 3.4e-12 77.0 72 55.6
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 3.8e-11 73.6 61 63.9
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 6.1e-09 66.2 59 55.9
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.3e-08 65.1 112 37.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.0e-08 63.9 36 83.3
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.7e-08 62.4 104 43.3


User provided reference genes

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