Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 9.4e-89 330.5 208 100.0
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 5.2e-63 245.0 208 73.6
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.4e-60 235.0 208 77.9
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 3.6e-56 222.2 198 76.8
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 2.7e-51 206.1 187 76.5
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 3.0e-50 202.6 205 70.2
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.6e-49 198.4 196 73.5
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 2.0e-46 189.9 203 69.0
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.4e-39 167.2 206 64.6
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.6e-38 162.9 200 57.0
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 3.4e-38 162.5 208 60.1
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 4.4e-38 162.2 206 64.6
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 4.4e-38 162.2 203 65.0
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.3e-37 160.6 194 65.5
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 6.4e-37 158.3 207 58.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.4e-36 157.1 187 65.2
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.4e-36 157.1 199 62.3
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.9e-36 156.8 208 62.5
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.9e-36 156.8 193 62.7
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.4e-36 156.4 191 57.1
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.4e-36 156.4 171 66.1
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.4e-36 156.4 171 66.1
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 4.1e-36 155.6 207 63.3
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.1e-36 155.6 190 65.3
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.1e-36 155.6 199 61.8
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 7.1e-36 154.8 197 44.2
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 9.2e-36 154.5 189 64.0
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 9.2e-36 154.5 206 61.7
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.6e-35 153.7 203 59.6
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 4.6e-35 152.1 197 43.1
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 4.6e-35 152.1 209 50.2
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 4.6e-35 152.1 194 63.4
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 6.0e-35 151.8 197 43.1
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.0e-34 151.0 190 43.2
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.0e-34 151.0 190 43.2
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.0e-34 151.0 194 64.4
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.7e-34 150.2 192 64.1
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 1.7e-34 150.2 193 62.7
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.3e-34 149.8 191 63.4
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 3.9e-34 149.1 186 59.1
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 3.9e-34 149.1 208 60.6
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.9e-34 149.1 208 60.6
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 3.9e-34 149.1 192 64.1
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 5.1e-34 148.7 206 62.6
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 6.6e-34 148.3 206 60.7
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 6.6e-34 148.3 193 63.7
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 6.6e-34 148.3 221 60.6
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.5e-33 147.1 209 59.8
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.5e-33 147.1 208 60.6
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.5e-33 147.1 208 60.6
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.9e-33 146.7 184 56.0
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-33 146.7 208 60.6
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.9e-33 146.7 190 59.5
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.9e-33 146.7 193 62.7
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.5e-33 146.4 209 59.8
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 2.5e-33 146.4 208 59.6
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 2.5e-33 146.4 209 59.3
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 3.3e-33 146.0 199 61.8
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 3.3e-33 146.0 199 61.8
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 3.3e-33 146.0 209 59.8
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 3.3e-33 146.0 206 59.2
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 4.3e-33 145.6 191 61.8
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 4.3e-33 145.6 192 62.5
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.3e-33 145.6 194 61.9
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 4.3e-33 145.6 208 60.1
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 5.6e-33 145.2 191 63.9
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 5.6e-33 145.2 200 61.5
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 9.5e-33 144.4 184 57.1
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 9.5e-33 144.4 208 60.1
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 9.5e-33 144.4 170 68.8
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 9.5e-33 144.4 185 64.3
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.2e-32 144.1 201 60.7
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.1e-32 143.3 203 63.1
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 2.1e-32 143.3 194 62.4
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 2.1e-32 143.3 201 61.7
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 2.1e-32 143.3 234 55.1
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 3.6e-32 142.5 191 55.5
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 3.6e-32 142.5 208 59.1
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 3.6e-32 142.5 177 63.8
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 3.6e-32 142.5 206 60.2
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 4.7e-32 142.1 194 60.8
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 6.2e-32 141.7 199 61.3
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 8.1e-32 141.4 207 61.8
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 1.8e-31 140.2 203 60.6
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 1.8e-31 140.2 192 46.9
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.8e-31 140.2 199 61.3
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 1.8e-31 140.2 236 43.6
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.4e-31 139.8 198 62.6
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.4e-31 139.8 198 62.6
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 2.4e-31 139.8 209 58.9
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 2.4e-31 139.8 209 58.4
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 2.4e-31 139.8 204 57.8
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 3.1e-31 139.4 192 62.0
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 3.1e-31 139.4 189 62.4
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 4.0e-31 139.0 197 60.4
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 8.9e-31 137.9 196 54.1
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.2e-30 137.5 185 53.5
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 2.2e-29 133.3 170 66.5
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 2.2e-29 133.3 188 61.2
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 4.9e-29 132.1 192 62.0
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.1e-28 131.0 204 53.9
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.4e-28 130.6 195 52.3
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.4e-28 130.6 226 55.3
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 4.2e-28 129.0 196 57.7
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 9.2e-28 127.9 192 60.4
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 2.3e-26 123.2 203 48.3
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 6.6e-26 121.7 191 37.7
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 8.7e-26 121.3 162 64.2
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.1e-24 116.7 138 72.5
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 6.2e-24 115.2 164 47.0
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 6.2e-24 115.2 205 56.1
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 8.1e-24 114.8 198 43.4
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.8e-23 113.6 146 56.8
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 2.4e-23 113.2 138 58.0
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 4.0e-23 112.5 205 52.2
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 5.3e-23 112.1 181 56.9
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 9.0e-23 111.3 186 57.5
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.0e-22 110.2 191 47.6
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 3.4e-22 109.4 191 38.2
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 3.4e-22 109.4 191 38.2
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.3e-21 107.5 162 54.3
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.3e-21 107.5 162 54.3
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.3e-21 107.5 162 54.3
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.3e-21 107.5 162 54.3
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 1.7e-21 107.1 191 37.7
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 4.9e-21 105.5 191 37.2
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.1e-20 104.4 140 62.1
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.4e-20 103.2 138 67.4
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 3.2e-20 102.8 162 56.2
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 3.2e-20 102.8 162 56.2
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 5.4e-20 102.1 187 50.3
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.6e-17 92.0 139 65.5
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 9.6e-17 91.3 148 61.5
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 3.6e-16 89.4 167 34.7
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-15 87.8 139 48.2
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 2.4e-15 86.7 197 41.1
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.4e-15 86.7 168 42.9
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.4e-15 86.7 86 53.5
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.5e-14 84.0 118 61.9
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 9.9e-14 81.3 108 62.0
SGA_v2.0_scaffold75G24776 Striga asiatica HOM05D005036 ORTHO05D005881 9.9e-14 81.3 160 40.0
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 2.9e-13 79.7 81 61.7
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.2e-12 76.3 140 45.0
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 3.9e-10 69.3 188 48.4
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 5.1e-10 68.9 168 42.9
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.5e-09 67.4 64 62.5
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.9e-09 67.0 146 35.6
SalBow1G6050 Salvia bowleyana HOM05D005223 ORTHO05D005881 3.3e-09 66.2 68 61.8
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.6e-09 65.5 60 65.0
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 6.2e-08 62.0 61 45.9
SalBow5G3237 Salvia bowleyana HOM05D006370 ORTHO05D008324 6.2e-08 62.0 52 65.4


User provided reference genes

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