Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 0.0e+00 1188.7 577 100.0
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 0.0e+00 1100.9 562 93.8
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 0.0e+00 1095.1 561 92.9
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 0.0e+00 1092.4 562 92.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 0.0e+00 1091.3 562 92.5
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 0.0e+00 1085.9 573 90.6
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1085.9 557 92.6
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 0.0e+00 1084.3 563 91.7
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 0.0e+00 1077.0 563 91.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1076.6 564 91.7
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 0.0e+00 1075.1 557 91.9
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 3.9e-312 1074.7 562 91.6
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 3.9e-312 1073.5 556 91.7
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.2e-311 1072.4 564 91.5
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 2.0e-311 1071.6 557 91.4
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.6e-311 1070.8 557 91.2
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.6e-311 1070.8 557 91.2
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 7.9e-311 1069.7 557 91.4
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.9e-309 1065.1 557 91.6
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.5e-309 1064.7 556 91.4
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 4.3e-309 1063.9 565 91.2
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 9.6e-309 1062.8 556 90.6
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 4.8e-308 1060.4 564 90.8
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.2e-308 1060.1 563 89.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.1e-307 1059.3 556 91.0
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 2.4e-307 1058.1 557 90.1
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 3.1e-307 1057.7 562 89.7
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 5.3e-307 1057.0 557 90.1
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 6.9e-307 1056.6 565 88.3
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 3.4e-306 1054.3 561 88.8
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 3.4e-306 1054.3 561 88.8
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.3e-305 1052.4 558 90.3
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.7e-305 1052.0 557 89.6
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 4.9e-305 1050.4 558 88.5
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 6.4e-305 1050.0 557 89.9
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 6.4e-305 1050.0 558 88.9
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.4e-304 1048.9 557 88.5
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.9e-304 1048.5 557 89.2
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 5.5e-304 1047.0 557 89.6
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 5.5e-304 1047.0 558 90.0
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 7.1e-304 1046.6 557 89.8
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 7.1e-304 1046.6 557 88.9
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.2e-303 1045.8 562 89.1
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.6e-303 1043.9 552 88.6
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 567 86.8
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.8e-302 1042.0 557 90.1
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 3.0e-302 1041.2 562 88.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.0e-302 1041.2 562 88.8
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 5.1e-302 1040.4 562 88.8
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 6.7e-302 1040.0 557 88.9
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 8.7e-302 1039.6 556 89.4
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 556 89.0
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 557 89.4
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 552 88.6
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 7.4e-301 1036.6 558 88.4
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.3e-300 1035.8 562 89.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 573 87.1
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 557 87.6
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.8e-299 1031.9 557 87.6
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.8e-299 1031.9 556 88.7
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.1e-299 1031.2 566 88.0
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 6.9e-299 1030.0 563 87.9
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 9.0e-299 1029.6 561 87.5
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 9.0e-299 1029.6 561 87.5
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 5.8e-298 1026.9 562 87.9
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 4.9e-297 1023.8 566 86.7
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.9e-296 1021.9 559 87.5
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.5e-296 1021.5 561 86.3
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.5e-296 1021.5 562 86.1
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 557 88.0
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 551 88.6
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 4.2e-296 1020.8 559 87.7
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 557 86.0
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 569 85.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 552 86.2
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 5.1e-294 1013.8 551 86.9
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.3e-293 1011.1 557 85.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 5.7e-293 1010.4 557 85.6
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.4e-293 1010.0 560 85.5
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.3e-292 1009.2 560 86.4
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.3e-292 1009.2 560 86.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 568 85.9
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 558 85.8
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 550 86.7
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.1e-291 1004.2 549 86.9
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.6e-290 1000.0 549 86.3
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.7e-289 998.8 534 87.8
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 5.0e-289 997.3 563 85.1
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 5.5e-288 993.8 563 85.1
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 5.5e-288 993.8 563 85.1
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 5.5e-288 993.8 563 85.1
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 9.3e-288 993.0 563 84.9
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 9.3e-288 993.0 557 85.3
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.2e-287 992.6 563 84.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.7e-287 991.5 563 84.4
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 2.7e-287 991.5 563 84.4
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 2.7e-287 991.5 563 84.4
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.7e-287 991.5 563 84.9
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-286 989.2 563 84.5
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.3e-286 988.4 563 84.2
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 5.1e-286 987.3 563 83.8
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.6e-284 982.2 565 84.4
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 6.3e-284 980.3 558 84.4
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.1e-283 979.5 558 84.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.4e-283 979.2 563 82.8
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.8e-283 978.8 558 83.9
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.4e-283 978.4 554 84.3
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 4.1e-283 977.6 563 83.3
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.3e-283 977.2 561 82.5
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-282 975.7 558 84.1
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 4.5e-282 974.2 563 82.4
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 5.9e-282 973.8 571 82.0
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.9e-282 973.8 576 80.7
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 7.7e-282 973.4 561 81.8
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.3e-281 972.6 563 81.7
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.7e-281 972.2 563 82.9
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 2.2e-281 971.8 562 83.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.0e-281 970.7 569 81.5
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.6e-279 964.5 560 84.3
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 9.7e-277 956.4 563 80.5
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 4.8e-276 954.1 561 80.6
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.4e-274 948.0 565 79.6
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 8.5e-273 943.3 554 80.3
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.6e-271 937.9 554 79.4
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.1e-269 932.9 553 80.3
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 4.1e-267 924.5 524 84.4
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.6e-266 922.5 554 79.4
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 1.3e-265 919.5 563 77.1
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.2e-263 912.9 567 76.7
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 3.6e-263 911.4 558 79.4
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 8.8e-262 906.7 557 81.5
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 4.1e-259 897.9 562 76.9
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.7e-257 892.5 562 74.9
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 9.4e-256 886.7 561 75.8
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 9.8e-253 876.7 564 75.7
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.0e-249 866.7 553 76.3
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.2e-245 853.2 561 72.9
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 4.5e-242 841.3 561 72.5
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.7e-241 839.3 466 84.1
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 8.3e-228 793.9 424 89.9
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.1e-219 765.0 566 68.4
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.1e-218 762.7 562 68.7
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.2e-215 753.4 425 83.5
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-193 680.2 373 84.2
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.1e-182 642.5 541 57.1
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.0e-172 608.6 417 73.6
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.8e-169 597.8 328 83.8
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.4e-166 590.5 488 55.9
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.5e-165 585.5 522 52.9
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 3.7e-159 565.8 291 89.3
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.1e-150 537.7 418 60.0
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.1e-142 509.6 563 51.7
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-141 507.3 552 51.8
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.1e-130 470.3 318 71.7
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.0e-130 468.4 467 55.7
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 8.1e-90 335.5 549 39.9
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.4e-86 323.9 212 75.0
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.4e-81 308.1 491 36.9
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 4.8e-66 256.5 190 66.3
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 9.0e-65 252.3 190 65.3
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.0e-63 248.8 166 69.9
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.1e-51 208.8 113 86.7
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.4e-49 201.8 133 77.4
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 2.6e-48 197.6 128 71.1
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.2e-47 194.5 128 77.3
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 6.1e-45 186.4 166 63.3
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-44 184.5 166 63.3
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 3.9e-44 183.7 166 63.3
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 4.4e-43 180.3 166 62.7
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.3e-41 173.3 319 33.2
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.8e-33 148.3 495 27.3
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 7.7e-32 142.9 87 73.6
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 7.7e-32 142.9 90 74.4
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 3.6e-29 134.0 213 39.9
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 4.0e-28 130.6 76 73.7
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.6e-27 127.9 85 65.9
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 8.5e-23 112.8 184 40.8
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-21 106.3 166 44.0
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.3e-18 99.0 103 49.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 4.4e-11 73.9 46 65.2
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 7.3e-06 56.6 40 75.0


User provided reference genes

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