Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 2.0e-80 302.4 154 100.0
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 1.5e-43 179.9 143 70.6
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 1.3e-31 140.2 141 63.1
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 4.7e-29 131.7 142 55.6
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 4.9e-26 121.7 120 60.0
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 3.2e-25 119.0 145 51.0
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 1.3e-18 97.1 116 51.7
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 1.7e-18 96.7 125 48.8
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 1.4e-17 93.6 125 50.4
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 1.6e-16 90.1 121 46.3
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 8.7e-15 84.3 113 44.2
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 1.1e-14 84.0 142 41.5
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.5e-14 83.6 138 42.0
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.9e-14 83.2 160 37.5
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 3.3e-14 82.4 135 40.7
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 3.3e-14 82.4 134 45.5
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 2.8e-13 79.3 119 44.5
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 6.2e-13 78.2 139 39.6
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 6.2e-13 78.2 144 40.3
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.1e-12 77.4 128 43.0
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 1.8e-12 76.6 121 39.7
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 3.1e-12 75.9 152 38.2
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 4.0e-12 75.5 133 41.4
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 1.5e-11 73.6 140 37.1
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 2.0e-11 73.2 108 45.4
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 2.0e-11 73.2 113 41.6
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 2.0e-11 73.2 131 41.2
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 3.4e-11 72.4 106 48.1
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 4.5e-11 72.0 140 37.1
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 4.5e-11 72.0 131 38.9
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 4.5e-11 72.0 144 40.3
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 4.5e-11 72.0 138 39.1
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 7.6e-11 71.2 133 38.3
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 7.6e-11 71.2 131 35.9
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 9.9e-11 70.9 124 41.9
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 1.3e-10 70.5 129 39.5
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 1.3e-10 70.5 142 39.4
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.7e-10 70.1 141 36.2
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 1.7e-10 70.1 111 42.3
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 2.2e-10 69.7 127 38.6
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 2.9e-10 69.3 111 45.0
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 2.9e-10 69.3 111 45.9
Dinv04757 Davidia involucrata HOM05D005932 ORTHO05D006213 3.8e-10 68.9 95 47.4
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.8e-10 68.9 112 42.9
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 3.8e-10 68.9 130 39.2
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 6.4e-10 68.2 141 34.0
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 6.4e-10 68.2 116 40.5
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 8.4e-10 67.8 128 34.4
Lj6g0008899 Lotus japonicus HOM05D005932 ORTHO05D006213 8.4e-10 67.8 122 39.3
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 1.4e-09 67.0 132 34.1
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.9e-09 66.6 112 42.0
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 1.9e-09 66.6 117 42.7
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 2.4e-09 66.2 123 40.7
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 3.2e-09 65.9 136 35.3
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 4.2e-09 65.5 120 38.3
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 5.5e-09 65.1 125 34.4
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 5.5e-09 65.1 114 41.2
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 7.1e-09 64.7 132 35.6
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 7.1e-09 64.7 128 34.4
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 9.3e-09 64.3 110 40.0
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 9.3e-09 64.3 110 40.0
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 9.3e-09 64.3 110 40.0
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 9.3e-09 64.3 112 41.1
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 9.3e-09 64.3 111 37.8
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 9.3e-09 64.3 128 38.3
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.2e-08 63.9 130 38.5
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 1.2e-08 63.9 134 38.1
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.6e-08 63.5 126 39.7
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 1.6e-08 63.5 112 41.1
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 2.7e-08 62.8 121 38.0
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 3.5e-08 62.4 115 36.5
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 3.5e-08 62.4 127 35.4
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 4.6e-08 62.0 112 41.1
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 4.6e-08 62.0 116 35.3
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 6.0e-08 61.6 112 41.1
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 7.9e-08 61.2 117 39.3
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 7.9e-08 61.2 151 33.8
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 1.0e-07 60.8 111 38.7
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 1.3e-07 60.5 110 38.2
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.8e-07 60.1 151 33.1
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.9e-07 58.9 139 34.5
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 5.1e-07 58.5 112 37.5
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 5.1e-07 58.5 143 37.1
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 6.7e-07 58.2 134 36.6
Glyma.15G130200 Glycine max HOM05D005932 ORTHO05D006213 8.7e-07 57.8 141 31.9
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 1.5e-06 57.0 128 35.2
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 1.5e-06 57.0 115 38.3
Sopen02g019050 Solanum pennellii HOM05D005932 ORTHO05D006213 1.5e-06 57.0 134 35.8
TPR.G26337 Trifolium pratense HOM05D005932 ORTHO05D006213 1.9e-06 56.6 117 36.8
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 2.5e-06 56.2 116 39.7


User provided reference genes

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