Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 1.7e-64 249.2 131 100.0
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 2.0e-52 209.1 131 84.0
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.4e-52 208.0 131 84.7
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 5.8e-52 207.6 131 84.0
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 1.3e-51 206.5 131 84.0
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 82.4
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 83.2
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 80.9
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 80.9
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 82.4
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 6.4e-51 204.1 131 80.2
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 6.4e-51 204.1 131 83.2
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 6.4e-51 204.1 131 80.9
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 8.4e-51 203.8 131 80.9
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 8.4e-51 203.8 131 80.9
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 8.4e-51 203.8 131 80.9
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 8.4e-51 203.8 131 80.9
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 8.4e-51 203.8 131 82.4
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 8.4e-51 203.8 131 82.4
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 1.1e-50 203.4 131 80.9
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.1e-50 203.4 132 83.3
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.1e-50 203.4 131 81.7
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 1.9e-50 202.6 131 80.2
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.9e-50 202.6 131 81.7
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 2.4e-50 202.2 131 80.9
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 2.4e-50 202.2 131 81.7
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 2.4e-50 202.2 131 81.7
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 2.4e-50 202.2 131 80.9
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 3.2e-50 201.8 131 80.9
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 4.1e-50 201.4 133 81.2
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 4.1e-50 201.4 131 80.9
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 5.4e-50 201.1 131 80.2
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 7.1e-50 200.7 133 82.0
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 9.2e-50 200.3 130 82.3
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 9.2e-50 200.3 131 81.7
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 9.2e-50 200.3 131 82.4
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.2e-49 199.9 131 80.2
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.2e-49 199.9 128 82.8
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 1.2e-49 199.9 131 81.7
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 1.6e-49 199.5 131 81.7
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 80.3
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 80.3
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 80.3
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 80.3
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.6e-49 199.5 131 80.2
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 84.1
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 1.6e-49 199.5 131 81.7
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 2.1e-49 199.1 131 80.2
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 2.7e-49 198.7 131 79.4
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 3.5e-49 198.4 132 79.5
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 3.5e-49 198.4 131 79.4
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 3.5e-49 198.4 131 79.4
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 4.6e-49 198.0 132 79.5
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 4.6e-49 198.0 132 79.5
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 6.0e-49 197.6 131 77.1
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 6.0e-49 197.6 131 80.2
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 7.8e-49 197.2 131 80.2
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 1.0e-48 196.8 131 77.9
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 1.0e-48 196.8 131 80.2
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 1.3e-48 196.4 131 79.4
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.7e-48 196.1 130 79.2
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 1.7e-48 196.1 130 80.8
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 2.3e-48 195.7 131 77.9
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 3.0e-48 195.3 132 78.8
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 3.9e-48 194.9 128 80.5
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 81.8
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 3.9e-48 194.9 130 78.5
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 3.9e-48 194.9 130 78.5
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 3.9e-48 194.9 133 78.9
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 5.1e-48 194.5 132 79.5
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 5.1e-48 194.5 132 79.5
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.1e-48 194.5 130 80.0
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 6.6e-48 194.1 131 77.1
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 6.6e-48 194.1 131 77.1
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 8.6e-48 193.7 130 79.2
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 8.6e-48 193.7 132 78.8
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 8.6e-48 193.7 132 80.3
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.1e-47 193.4 131 77.1
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 1.1e-47 193.4 134 78.4
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 1.5e-47 193.0 131 77.1
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 1.5e-47 193.0 131 78.6
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.9e-47 192.6 131 77.9
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 2.5e-47 192.2 131 78.6
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.5e-47 192.2 132 78.8
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.5e-47 192.2 132 78.8
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 3.3e-47 191.8 130 77.7
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 3.3e-47 191.8 131 78.6
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 4.3e-47 191.4 131 77.1
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 4.3e-47 191.4 130 78.5
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 4.3e-47 191.4 132 79.5
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 5.6e-47 191.0 130 77.7
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.6e-47 191.0 130 77.7
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 9.6e-47 190.3 133 78.9
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 1.2e-46 189.9 131 75.6
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.6e-46 189.5 132 78.8
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.6e-46 189.5 134 79.1
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.6e-46 188.3 129 77.5
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 6.2e-46 187.6 130 76.9
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 6.2e-46 187.6 133 77.4
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 8.1e-46 187.2 127 78.0
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 8.1e-46 187.2 131 76.3
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.1e-45 186.8 124 80.6
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 1.4e-45 186.4 131 77.1
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 2.4e-45 185.7 132 78.0
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 3.1e-45 185.3 127 78.0
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 3.1e-45 185.3 127 78.0
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 4.0e-45 184.9 131 76.3
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 4.0e-45 184.9 127 77.2
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 6.8e-45 184.1 131 75.6
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 1.2e-44 183.3 132 75.8
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.2e-44 183.3 137 76.6
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.2e-44 183.3 130 78.5
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.2e-44 183.3 132 72.7
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.2e-44 183.3 131 74.8
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 2.0e-44 182.6 131 75.6
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 5.8e-44 181.0 132 77.3
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.7e-43 179.5 132 72.0
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 2.2e-43 179.1 133 75.9
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 1.9e-42 176.0 129 74.4
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.2e-42 175.3 105 87.6
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 3.2e-42 175.3 162 63.0
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 1.6e-41 172.9 130 74.6
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 2.1e-41 172.6 132 73.5
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 2.7e-41 172.2 131 71.8
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 3.5e-41 171.8 128 72.7
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 7.8e-41 170.6 138 71.0
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 1.0e-40 170.2 124 70.2
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 1.7e-40 169.5 102 85.3
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 6.6e-40 167.5 130 67.7
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.8e-37 159.5 133 65.4
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.3e-35 153.3 133 63.9
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.2e-35 152.5 120 67.5
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.1e-34 150.2 120 66.7
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 3.2e-34 148.7 127 70.9
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 7.1e-34 147.5 127 69.3
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 9.3e-34 147.1 127 65.4
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 4.3e-31 138.3 88 78.4
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 5.8e-28 127.9 131 58.8
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.4e-21 106.7 98 57.1
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 9.0e-21 104.0 78 70.5
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 2.9e-19 99.0 106 53.8
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.4e-13 79.3 66 63.6
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 1.2e-12 77.0 48 81.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 1.8e-08 63.2 92 41.3
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 8.7e-08 60.8 78 43.6


User provided reference genes

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