Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold223G42835 Striga asiatica HOM05D000253 ORTHO05D406526 1.6e-144 516.2 268 100.0
SGA_v2.0_scaffold223G42832 Striga asiatica HOM05D000253 ORTHO05D000149 4.9e-13 79.3 50 74.0
Migut.M01867 Erythranthe guttata HOM05D000253 ORTHO05D000149 1.3e-10 71.2 49 61.2
Oeu015207.1 Olea europaea HOM05D000253 ORTHO05D000149 1.7e-10 70.9 51 56.9
Oeu031322.1 Olea europaea HOM05D000253 ORTHO05D000149 2.3e-10 70.5 51 58.8
MSTRG.7521 Avicennia marina HOM05D000253 ORTHO05D000149 3.9e-10 69.7 49 59.2
TAR627G0964 Trochodendron aralioides HOM05D000253 ORTHO05D000149 1.9e-09 67.4 72 41.7
CiPaw.09G118800 Carya illinoinensis HOM05D000253 ORTHO05D000149 4.3e-09 66.2 51 52.9
Lj1C1167G10 Lonicera japonica HOM05D000253 ORTHO05D000149 4.3e-09 66.2 63 49.2
COL.COLO4_30997 Corchorus olitorius HOM05D000253 ORTHO05D000149 5.6e-09 65.9 51 52.9
Rhsim13G0118500 Rhododendron simsii HOM05D000253 ORTHO05D000149 5.6e-09 65.9 49 53.1
Duzib235G0898 Durio zibethinus HOM05D000253 ORTHO05D000149 7.3e-09 65.5 51 52.9
CSS0034944 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 9.5e-09 65.1 51 54.9
CiPaw.09G118700 Carya illinoinensis HOM05D000253 ORTHO05D000149 9.5e-09 65.1 51 52.9
Dinv32206 Davidia involucrata HOM05D000834 ORTHO05D000909 9.5e-09 65.1 49 53.1
CSS0000709 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 1.2e-08 64.7 51 52.9
CSS0017798 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 1.2e-08 64.7 51 52.9
Lj1C1167T11 Lonicera japonica HOM05D000253 ORTHO05D000149 1.2e-08 64.7 63 47.6
Nitab4.5_0000315g0140 Nicotiana tabacum HOM05D000253 ORTHO05D000149 1.2e-08 64.7 49 55.1
Nitab4.5_0004449g0050 Nicotiana tabacum HOM05D000253 ORTHO05D000149 1.2e-08 64.7 49 55.1
Actinidia13437 Actinidia chinensis HOM05D000253 ORTHO05D000149 1.6e-08 64.3 51 54.9
Actinidia30735 Actinidia chinensis HOM05D000253 ORTHO05D000149 1.6e-08 64.3 51 54.9
Duzib160G0353 Durio zibethinus HOM05D000253 ORTHO05D000149 1.6e-08 64.3 51 52.9
MD05G1277700 Malus domestica HOM05D000253 ORTHO05D000149 1.6e-08 64.3 49 55.1
QL05p054633 Quercus lobata HOM05D000253 ORTHO05D000149 1.6e-08 64.3 49 53.1
TAR629G2515 Trochodendron aralioides HOM05D000253 ORTHO05D000149 1.6e-08 64.3 49 53.1
Glyma.08G100400 Glycine max HOM05D000253 ORTHO05D000149 2.1e-08 63.9 63 49.2
Gohir.A10G044400 Gossypium hirsutum HOM05D000253 ORTHO05D000149 2.1e-08 63.9 49 55.1
Gohir.D10G045600 Gossypium hirsutum HOM05D000253 ORTHO05D000149 2.1e-08 63.9 49 55.1
Gorai.011G048500 Gossypium raimondii HOM05D000253 ORTHO05D000149 2.1e-08 63.9 49 55.1
CSS0002943 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 2.8e-08 63.5 63 47.6
FvH4_3g04960 Fragaria vesca HOM05D000253 ORTHO05D000149 2.8e-08 63.5 49 57.1
FAN11G0533 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.8e-08 63.5 49 57.1
FAN16G2618 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.8e-08 63.5 49 57.1
FAN21G3577 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.8e-08 63.5 49 57.1
FAN25G3437 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.8e-08 63.5 49 57.1
MD05G1277800 Malus domestica HOM05D000253 ORTHO05D000149 2.8e-08 63.5 49 55.1
Nn3g20302 Nelumbo nucifera HOM05D000253 ORTHO05D000149 2.8e-08 63.5 48 54.2
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 3.6e-08 63.2 48 54.2
Thecc.06G143400 Theobroma cacao HOM05D000253 ORTHO05D000149 3.6e-08 63.2 51 51.0
MD05G1278100 Malus domestica HOM05D000253 ORTHO05D000149 4.7e-08 62.8 63 47.6
TAR627G0670 Trochodendron aralioides HOM05D000253 ORTHO05D000149 4.7e-08 62.8 51 49.0
CANSAT35G0785 Cannabis sativa HOM05D000253 ORTHO05D000149 6.1e-08 62.4 51 51.0
COL.COLO4_30999 Corchorus olitorius HOM05D000253 ORTHO05D000149 6.1e-08 62.4 51 49.0
MD05G1278200 Malus domestica HOM05D000253 ORTHO05D000149 6.1e-08 62.4 49 53.1
RcHm_v2.0_Chr5g0015021 Rosa chinensis HOM05D000253 ORTHO05D000149 6.1e-08 62.4 49 55.1
Atru.chr10.1046 Acer truncatum HOM05D000253 ORTHO05D000149 8.0e-08 62.0 49 53.1
DCAR_003879 Daucus carota HOM05D000253 ORTHO05D000149 8.0e-08 62.0 49 49.0
Eucgr.D00253 Eucalyptus grandis HOM05D000253 ORTHO05D000149 8.0e-08 62.0 54 51.9
Hma1.2p1_0586F.1_g183780 Hydrangea macrophylla HOM05D000253 ORTHO05D000149 8.0e-08 62.0 47 53.2
MD05G1278000 Malus domestica HOM05D000253 ORTHO05D000149 8.0e-08 62.0 60 46.7
PGR083G2728 Punica granatum HOM05D000253 ORTHO05D000149 8.0e-08 62.0 49 53.1
CSS0050175 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 1.0e-07 61.6 51 54.9
Cc00_g24390 Coffea canephora HOM05D000253 ORTHO05D000149 1.4e-07 61.2 48 52.1
TAR627G0691 Trochodendron aralioides HOM05D000253 ORTHO05D000149 2.3e-07 60.5 51 47.1
Solyc08g022240.1 Solanum lycopersicum HOM05D000253 ORTHO05D000149 3.1e-07 60.1 48 52.1
PGSC0003DMG400002291 Solanum tuberosum HOM05D000253 ORTHO05D000149 3.1e-07 60.1 48 52.1
Prupe.4G086500 Prunus persica HOM05D000253 ORTHO05D000149 4.0e-07 59.7 48 50.0
Sopen08g008500 Solanum pennellii HOM05D000253 ORTHO05D000149 4.0e-07 59.7 48 52.1
arahy.Tifrunner.gnm1.ann1.QMGJ7U Arachis hypogaea HOM05D000253 ORTHO05D000149 5.2e-07 59.3 63 46.0
arahy.Tifrunner.gnm1.ann1.ZNQH18 Arachis hypogaea HOM05D000253 ORTHO05D000149 5.2e-07 59.3 63 46.0
Dinv21504 Davidia involucrata HOM05D000253 ORTHO05D000149 5.2e-07 59.3 49 51.0
MBI02_g15125_MAGBIO Magnolia biondii HOM05D000253 ORTHO05D000149 5.2e-07 59.3 48 50.0
Ciclev10014927m.g Citrus clementina HOM05D000253 ORTHO05D000149 6.8e-07 58.9 50 54.0
HanXRQChr15g0481581 Helianthus annuus HOM05D000253 ORTHO05D000149 8.9e-07 58.5 48 54.2
Cfa000881 Carpinus fangiana HOM05D000253 ORTHO05D000149 1.2e-06 58.2 51 47.1
Lsat_1_v5_gn_7_29201 Lactuca sativa HOM05D000253 ORTHO05D000149 1.2e-06 58.2 48 52.1
CAN.G36.31 Capsicum annuum HOM05D000253 ORTHO05D000149 1.5e-06 57.8 49 46.9
Cfa000883 Carpinus fangiana HOM05D000253 ORTHO05D000149 2.0e-06 57.4 51 47.1
ECA236G2392 Erigeron canadensis HOM05D000253 ORTHO05D000149 3.4e-06 56.6 72 43.1
PSO017G2403 Papaver somniferum HOM05D000253 ORTHO05D000149 3.4e-06 56.6 70 40.0
Aqoxy2G03599 Aquilegia oxysepala HOM05D000253 ORTHO05D000149 7.5e-06 55.5 49 49.0


User provided reference genes

Program Settings