Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold223G42810 Striga asiatica HOM05D002924 ORTHO05D003122 4.4e-68 261.2 132 100.0
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 5.1e-24 114.8 123 56.9
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 5.1e-24 114.8 139 53.2
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 1.1e-23 113.6 125 52.0
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 2.0e-23 112.8 125 57.6
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 2.0e-20 102.8 127 49.6
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 2.6e-20 102.4 121 47.1
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 1.7e-19 99.8 124 49.2
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 3.8e-19 98.6 127 45.7
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.1e-18 97.1 124 49.2
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 1.1e-18 97.1 129 47.3
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 1.4e-18 96.7 125 46.4
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 3.2e-18 95.5 132 47.0
Potri.011G083900 Populus trichocarpa HOM05D002924 ORTHO05D003122 3.2e-18 95.5 132 47.0
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 3.2e-18 95.5 126 46.8
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 4.2e-18 95.1 131 46.6
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 5.5e-18 94.7 128 49.2
Solyc08g036660.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 5.5e-18 94.7 128 45.3
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 2.1e-17 92.8 127 49.6
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 3.6e-17 92.0 127 46.5
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 1.0e-16 90.5 132 46.2
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 1.0e-16 90.5 122 46.7
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 1.0e-16 90.5 122 46.7
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.8e-16 89.7 124 46.8
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 1.8e-16 89.7 132 44.7
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 2.3e-16 89.4 121 46.3
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 3.0e-16 89.0 129 43.4
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 3.9e-16 88.6 125 44.0
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 3.9e-16 88.6 128 42.2
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 3.9e-16 88.6 126 42.9
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 5.2e-16 88.2 121 43.8
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 6.7e-16 87.8 124 44.4
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 8.8e-16 87.4 124 46.8
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 1.1e-15 87.0 124 43.5
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 1.1e-15 87.0 128 45.3
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 1.1e-15 87.0 121 47.1
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 1.5e-15 86.7 125 44.8
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 1.5e-15 86.7 126 45.2
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 1.5e-15 86.7 123 46.3
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 2.0e-15 86.3 125 44.8
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 2.0e-15 86.3 126 42.9
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 2.6e-15 85.9 136 41.2
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 2.6e-15 85.9 121 45.5
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.3e-15 85.5 125 45.6
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 4.4e-15 85.1 152 38.2
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 4.4e-15 85.1 129 45.0
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 7.4e-15 84.3 123 41.5
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.7e-14 83.2 128 46.1
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 2.2e-14 82.8 126 41.3
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 2.8e-14 82.4 142 38.7
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.8e-14 82.4 125 41.6
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.7e-14 82.0 127 40.9
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 3.7e-14 82.0 128 45.3
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.8e-14 81.6 132 46.2
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 6.3e-14 81.3 125 44.8
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 6.3e-14 81.3 126 41.3
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 6.3e-14 81.3 127 40.9
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 6.3e-14 81.3 129 41.1
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 8.2e-14 80.9 128 44.5
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 8.2e-14 80.9 131 41.2
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 8.2e-14 80.9 127 44.9
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 8.2e-14 80.9 125 44.0
Actinidia15640 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.1e-13 80.5 102 46.1
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 1.4e-13 80.1 127 40.9
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 1.4e-13 80.1 128 41.4
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 1.4e-13 80.1 126 42.9
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.4e-13 80.1 131 40.5
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.4e-13 80.1 131 40.5
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 1.4e-13 80.1 128 40.6
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 1.4e-13 80.1 136 39.0
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.8e-13 79.7 127 40.2
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 1.8e-13 79.7 133 39.8
Sopen08g011410 Solanum pennellii HOM05D002924 ORTHO05D003122 1.8e-13 79.7 104 44.2
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 2.4e-13 79.3 128 41.4
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 3.1e-13 79.0 125 43.2
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 3.1e-13 79.0 139 40.3
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 3.1e-13 79.0 125 41.6
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 4.1e-13 78.6 122 42.6
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.3e-13 78.2 121 42.1
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 7.0e-13 77.8 125 40.0
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 7.0e-13 77.8 135 43.0
RcHm_v2.0_Chr5g0014381 Rosa chinensis HOM05D002924 ORTHO05D003122 7.0e-13 77.8 132 40.9
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 9.1e-13 77.4 121 41.3
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 9.1e-13 77.4 123 43.1
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 1.2e-12 77.0 121 38.0
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 1.6e-12 76.6 137 43.1
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 1.6e-12 76.6 126 40.5
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 1.6e-12 76.6 126 42.1
Sopen08g011370 Solanum pennellii HOM05D002924 ORTHO05D003122 2.0e-12 76.3 119 41.2
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 2.6e-12 75.9 130 35.4
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 2.6e-12 75.9 131 38.9
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 3.5e-12 75.5 126 41.3
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 4.5e-12 75.1 133 42.1
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 4.5e-12 75.1 132 40.9
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 7.7e-12 74.3 133 37.6
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 7.7e-12 74.3 95 44.2
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 7.7e-12 74.3 90 48.9
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.0e-11 73.9 122 43.4
BolC4t27859H Brassica oleracea HOM05D002924 ORTHO05D003122 1.7e-11 73.2 127 40.2
Lj4g0026158 Lotus japonicus HOM05D002924 ORTHO05D003122 1.7e-11 73.2 143 37.8
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 1.7e-11 73.2 127 40.2
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 2.2e-11 72.8 85 49.4
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 2.2e-11 72.8 135 36.3
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 2.2e-11 72.8 129 38.8
arahy.Tifrunner.gnm1.ann1.IG3UT7 Arachis hypogaea HOM05D002924 ORTHO05D003122 2.9e-11 72.4 143 34.3
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 2.9e-11 72.4 86 48.8
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 2.9e-11 72.4 78 52.6
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 5.0e-11 71.6 122 40.2
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 6.5e-11 71.2 143 37.1
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 8.5e-11 70.9 83 50.6
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 8.5e-11 70.9 134 37.3
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 1.1e-10 70.5 142 33.1
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 1.5e-10 70.1 130 39.2
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 1.9e-10 69.7 125 40.0
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 1.9e-10 69.7 135 37.8
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 2.5e-10 69.3 126 39.7
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.5e-10 69.3 78 51.3
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 4.2e-10 68.6 121 39.7
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 5.5e-10 68.2 126 38.9
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 5.5e-10 68.2 123 39.0
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 7.2e-10 67.8 132 37.9
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 7.2e-10 67.8 124 39.5
Manes.15G122700 Manihot esculenta HOM05D002924 ORTHO05D003122 9.4e-10 67.4 133 38.3
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 1.2e-09 67.0 124 36.3
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 1.6e-09 66.6 125 37.6
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.6e-09 66.6 129 40.3
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 2.1e-09 66.2 127 37.8
BcaC05g27039 Brassica carinata HOM05D002924 ORTHO05D003122 2.7e-09 65.9 133 38.3
BolC5t31621H Brassica oleracea HOM05D002924 ORTHO05D003122 2.7e-09 65.9 133 38.3
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 2.7e-09 65.9 86 46.5
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 3.6e-09 65.5 131 37.4
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 3.6e-09 65.5 131 37.4
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 3.6e-09 65.5 131 37.4
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 3.6e-09 65.5 131 37.4
BraA09t39160Z Brassica rapa HOM05D002924 ORTHO05D003122 3.6e-09 65.5 132 36.4
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 3.6e-09 65.5 123 37.4
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 6.1e-09 64.7 137 35.8
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 6.1e-09 64.7 130 36.2
THA.LOC104812674 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 6.1e-09 64.7 121 35.5
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 8.0e-09 64.3 80 46.2
BcaB06g28785 Brassica carinata HOM05D002924 ORTHO05D003122 1.0e-08 63.9 128 38.3
BcaB07g32615 Brassica carinata HOM05D002924 ORTHO05D003122 1.0e-08 63.9 132 36.4
BcaC02g11537 Brassica carinata HOM05D002924 ORTHO05D003122 1.0e-08 63.9 123 39.0
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 1.0e-08 63.9 136 37.5
C04p14200 Brassica napus HOM05D002924 ORTHO05D003122 1.0e-08 63.9 123 39.0
C05p28990 Brassica napus HOM05D002924 ORTHO05D003122 1.0e-08 63.9 133 37.6
BolC4t23009H Brassica oleracea HOM05D002924 ORTHO05D003122 1.0e-08 63.9 123 39.0
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 1.4e-08 63.5 122 38.5
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.4e-08 63.5 138 33.3
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 1.8e-08 63.2 124 35.5
A09p36360 Brassica napus HOM05D002924 ORTHO05D003122 2.3e-08 62.8 132 35.6
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 3.0e-08 62.4 79 45.6
Sp4g16870 Schrenkiella parvula HOM05D002924 ORTHO05D003122 3.0e-08 62.4 124 36.3
A05p11050 Brassica napus HOM05D002924 ORTHO05D003122 4.0e-08 62.0 123 38.2
CARHR128700 Cardamine hirsuta HOM05D002924 ORTHO05D003122 4.0e-08 62.0 128 34.4
DCAR_003905 Daucus carota HOM05D002924 ORTHO05D003122 4.0e-08 62.0 99 41.4
BraA05t20050Z Brassica rapa HOM05D002924 ORTHO05D003122 5.2e-08 61.6 123 38.2
FvH4_3g05360 Fragaria vesca HOM05D002924 ORTHO05D003122 5.2e-08 61.6 136 33.1
BraA04t18154Z Brassica rapa HOM05D002924 ORTHO05D003122 6.7e-08 61.2 125 38.4
A04p26500 Brassica napus HOM05D002924 ORTHO05D003122 8.8e-08 60.8 125 38.4
C04p63920 Brassica napus HOM05D002924 ORTHO05D003122 8.8e-08 60.8 125 38.4
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 8.8e-08 60.8 85 38.8
AL4G30580 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 1.2e-07 60.5 129 35.7
PGR004G2368 Punica granatum HOM05D002924 ORTHO05D003122 1.2e-07 60.5 129 37.2
PGR031G1937 Punica granatum HOM05D002924 ORTHO05D003122 1.2e-07 60.5 152 36.8
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 1.5e-07 60.1 126 33.3
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 1.5e-07 60.1 85 38.8
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 2.0e-07 59.7 135 37.0
Sp3g20070 Schrenkiella parvula HOM05D010332 ORTHO05D012427 2.0e-07 59.7 119 38.7
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 2.0e-07 59.7 128 34.4
AL270U10010 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 2.6e-07 59.3 130 33.1
AT2G34600 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 2.6e-07 59.3 133 36.1
Peaxi162Scf00647g00010 Petunia axillaris HOM05D002924 ORTHO05D003122 2.6e-07 59.3 133 33.8
HPP92_011075 Vanilla planifolia HOM05D002924 ORTHO05D003122 2.6e-07 59.3 86 40.7
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 3.3e-07 58.9 131 35.1
RcHm_v2.0_Chr5g0014391 Rosa chinensis HOM05D002924 ORTHO05D003122 5.7e-07 58.2 139 33.1
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 7.5e-07 57.8 80 45.0
TWI53G1424 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 7.5e-07 57.8 126 35.7
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 9.7e-07 57.4 136 34.6
BcaB02g09523 Brassica carinata HOM05D002924 ORTHO05D003122 1.7e-06 56.6 123 35.8
Phvul.006G001900 Phaseolus vulgaris HOM05D011327 ORTHO05D013488 1.7e-06 56.6 126 37.3
Lalb_Chr14g0362711 Lupinus albus HOM05D011327 ORTHO05D013488 2.2e-06 56.2 131 37.4
VMungo0540G1396 Vigna mungo HOM05D011327 ORTHO05D013488 2.2e-06 56.2 121 38.8
Oeu052362.1 Olea europaea HOM05D002924 ORTHO05D003122 2.8e-06 55.8 72 51.4
CANSAT64G2355 Cannabis sativa HOM05D002924 ORTHO05D003122 4.8e-06 55.1 96 35.4
Lalb_Chr22g0360811 Lupinus albus HOM05D011327 ORTHO05D013488 4.8e-06 55.1 126 37.3
Glyma.02G310100 Glycine max HOM05D011327 ORTHO05D013488 8.2e-06 54.3 124 39.5
Glyma.14G002600 Glycine max HOM05D011327 ORTHO05D013488 8.2e-06 54.3 119 38.7
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 8.2e-06 54.3 98 37.8


User provided reference genes

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