Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 4.3e-62 241.1 118 100.0
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 5.4e-49 197.6 108 87.0
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.9e-46 189.1 108 84.3
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.1e-45 185.7 108 78.7
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.4e-44 183.0 108 77.8
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 6.8e-44 180.6 108 76.9
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 6.8e-44 180.6 108 76.9
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.5e-43 179.5 108 74.1
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.6e-43 178.7 108 75.9
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 3.4e-43 178.3 105 77.1
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.4e-43 178.3 108 75.0
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 5.8e-43 177.6 105 78.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 7.5e-43 177.2 108 74.1
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 9.8e-43 176.8 108 73.1
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.3e-42 176.4 108 74.1
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.3e-42 176.4 108 74.1
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.7e-42 176.0 108 73.1
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.2e-42 175.6 108 73.1
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 2.9e-42 175.3 108 75.0
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.9e-42 175.3 108 72.2
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.7e-42 174.9 108 73.1
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 4.9e-42 174.5 108 71.3
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 4.9e-42 174.5 108 74.1
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 4.9e-42 174.5 108 72.2
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 6.4e-42 174.1 108 72.2
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 8.3e-42 173.7 108 73.1
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 8.3e-42 173.7 103 77.7
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-41 173.3 105 75.2
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.9e-41 172.6 105 76.2
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.4e-41 172.2 107 75.7
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.4e-41 172.2 105 74.3
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 3.2e-41 171.8 112 72.3
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 3.2e-41 171.8 112 72.3
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 3.2e-41 171.8 108 73.1
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 3.2e-41 171.8 108 73.1
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 4.1e-41 171.4 105 75.2
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.1e-41 171.4 98 79.6
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 4.1e-41 171.4 111 69.4
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.1e-41 171.4 108 69.4
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 5.4e-41 171.0 108 71.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 7.1e-41 170.6 108 71.3
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 7.1e-41 170.6 110 71.8
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 9.2e-41 170.2 108 68.5
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 9.2e-41 170.2 104 77.9
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.2e-40 169.9 105 74.3
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.2e-40 169.9 108 71.3
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.6e-40 169.5 111 69.4
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.6e-40 169.5 111 69.4
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.6e-40 169.5 111 69.4
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.6e-40 169.5 108 69.4
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.6e-40 169.5 102 76.5
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.6e-40 169.5 102 76.5
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.7e-40 168.7 105 74.3
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.7e-40 168.7 103 74.8
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 3.5e-40 168.3 108 69.4
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 4.6e-40 167.9 105 72.4
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-40 167.9 105 72.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-40 167.9 105 72.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-40 167.9 105 72.4
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-40 167.9 105 72.4
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-40 167.9 105 72.4
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-40 167.9 105 72.4
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 4.6e-40 167.9 102 76.5
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 4.6e-40 167.9 106 72.6
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 7.8e-40 167.2 111 66.7
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.0e-39 166.8 108 69.4
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.0e-39 166.8 108 69.4
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.3e-39 166.4 109 71.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.3e-39 166.4 103 73.8
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.7e-39 166.0 108 69.4
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.7e-39 166.0 108 66.7
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 2.3e-39 165.6 103 73.8
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.3e-39 165.6 108 71.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 3.0e-39 165.2 105 75.2
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.0e-39 165.2 105 73.3
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 3.0e-39 165.2 108 71.3
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 3.9e-39 164.9 105 71.4
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 5.1e-39 164.5 103 71.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 5.1e-39 164.5 103 71.8
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 8.6e-39 163.7 103 70.9
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 8.6e-39 163.7 108 66.7
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 8.6e-39 163.7 103 72.8
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 8.6e-39 163.7 103 72.8
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 8.6e-39 163.7 102 73.5
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 8.6e-39 163.7 102 73.5
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.1e-38 163.3 103 70.9
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-38 163.3 102 73.5
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.9e-38 162.5 103 68.9
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.3e-38 161.8 108 69.4
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.2e-37 159.8 108 68.5
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.2e-37 159.8 107 75.7
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.6e-37 159.5 114 67.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.6e-37 159.5 108 63.0
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 2.1e-37 159.1 101 74.3
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.8e-37 158.7 118 65.3
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.6e-37 158.3 103 68.0
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.1e-36 156.8 101 71.3
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.4e-36 156.4 103 68.9
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.8e-36 156.0 102 69.6
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.3e-36 155.6 103 68.9
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 6.8e-36 154.1 114 66.7
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 6.8e-36 154.1 114 66.7
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 6.8e-36 154.1 114 66.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 8.9e-36 153.7 111 68.5
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.5e-35 152.9 114 67.5
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.4e-35 151.8 111 67.6
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.4e-35 151.8 102 68.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 4.4e-35 151.4 114 65.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 4.4e-35 151.4 114 65.8
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 4.4e-35 151.4 103 66.0
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 7.6e-35 150.6 114 65.8
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 7.6e-35 150.6 114 65.8
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 9.9e-35 150.2 114 65.8
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.3e-34 149.8 114 64.0
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.7e-34 149.4 103 66.0
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.7e-34 149.4 103 65.0
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.2e-34 149.1 114 64.9
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.2e-34 149.1 114 64.9
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 2.2e-34 149.1 114 65.8
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 3.8e-34 148.3 100 67.0
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 4.9e-34 147.9 114 64.0
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 4.9e-34 147.9 114 63.2
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.9e-34 147.9 101 66.3
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 8.4e-34 147.1 115 64.3
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.9e-33 146.0 106 69.8
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 2.4e-33 145.6 115 63.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 5.4e-33 144.4 104 64.4
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 7.1e-33 144.1 104 64.4
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.7e-31 139.4 102 64.7
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.5e-30 136.3 102 64.7
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 7.3e-30 134.0 104 57.7
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.1e-29 132.5 77 76.6
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 2.6e-27 125.6 95 63.2
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.8e-20 102.8 77 63.6
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 4.0e-20 101.7 77 62.3
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 3.0e-15 85.5 51 78.4
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 3.3e-14 82.0 57 66.7
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 4.3e-14 81.6 51 70.6
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.6e-08 61.6 104 34.6


User provided reference genes

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