Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 2.3e-105 385.6 194 100.0
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 7.1e-14 81.6 56 69.6
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 3.9e-12 75.9 58 63.8
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 8.7e-12 74.7 66 59.1
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.3e-10 70.9 59 61.0
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 2.1e-10 70.1 40 87.5
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 2.1e-10 70.1 92 44.6
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 2.8e-10 69.7 96 44.8
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 2.8e-10 69.7 40 85.0
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 6.2e-10 68.6 40 82.5
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 8.1e-10 68.2 40 82.5
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 1.1e-09 67.8 40 80.0
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 1.4e-09 67.4 40 80.0
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.4e-09 67.4 40 80.0
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.8e-09 67.0 40 80.0
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.8e-09 67.0 40 80.0
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 4.0e-09 65.9 40 77.5
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 4.0e-09 65.9 40 77.5
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 5.3e-09 65.5 40 75.0
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 6.9e-09 65.1 40 77.5
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 6.9e-09 65.1 40 77.5
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 6.9e-09 65.1 40 77.5
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 6.9e-09 65.1 40 77.5
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 6.9e-09 65.1 40 77.5
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 6.9e-09 65.1 40 80.0
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 6.9e-09 65.1 40 77.5
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 9.0e-09 64.7 40 75.0
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.0e-09 64.7 40 75.0
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 9.0e-09 64.7 40 75.0
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 9.0e-09 64.7 40 77.5
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.2e-08 64.3 40 75.0
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.2e-08 64.3 41 73.2
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.2e-08 64.3 40 75.0
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.5e-08 63.9 40 72.5
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.5e-08 63.9 40 72.5
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 1.5e-08 63.9 40 72.5
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 72.5
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.0e-08 63.5 41 80.5
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.0e-08 63.5 41 80.5
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 2.6e-08 63.2 40 72.5
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 2.6e-08 63.2 40 72.5
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 2.6e-08 63.2 40 72.5
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.6e-08 63.2 40 75.0
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 2.6e-08 63.2 40 72.5
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.6e-08 63.2 40 72.5
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 4.5e-08 62.4 40 72.5
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 4.5e-08 62.4 40 72.5
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 4.5e-08 62.4 40 72.5
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.5e-08 62.4 40 75.0
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 4.5e-08 62.4 40 72.5
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 4.5e-08 62.4 40 75.0
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 5.8e-08 62.0 40 75.0
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.8e-08 62.0 40 72.5
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 5.8e-08 62.0 40 70.0
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 5.8e-08 62.0 40 72.5
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 5.8e-08 62.0 40 70.0
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 7.6e-08 61.6 40 72.5
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 9.9e-08 61.2 40 70.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.3e-07 60.8 40 72.5
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 1.3e-07 60.8 40 72.5
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 2.9e-07 59.7 40 70.0
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 2.9e-07 59.7 40 70.0
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 2.9e-07 59.7 40 70.0
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.1e-06 57.8 40 72.5
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.1e-06 57.8 40 72.5
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.2e-06 55.8 36 72.2
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 5.4e-06 55.5 40 70.0
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 5.4e-06 55.5 40 67.5
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 5.4e-06 55.5 40 67.5


User provided reference genes

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