Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.3e-170 603.2 351 100.0
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.6e-117 426.8 330 77.3
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 5.3e-100 368.6 340 66.5
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 5.8e-99 365.2 329 67.8
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.9e-97 360.1 328 66.5
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 2.5e-86 323.2 329 64.7
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 2.5e-86 323.2 342 59.6
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 3.5e-72 276.2 364 49.5
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 6.1e-72 275.4 340 51.5
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 7.9e-72 275.0 365 49.3
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 6.7e-71 271.9 337 54.6
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 9.0e-68 261.5 343 51.0
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.1e-64 250.4 348 50.6
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 5.1e-63 245.7 352 49.4
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 8.8e-63 245.0 341 50.7
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.1e-62 244.6 345 47.8
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 5.7e-62 242.3 351 47.9
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 9.7e-62 241.5 345 49.0
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.3e-61 241.1 340 48.5
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 3.7e-61 239.6 335 48.4
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.4e-60 237.7 335 49.6
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.4e-60 237.7 335 49.6
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.8e-60 237.3 335 47.5
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.8e-60 237.3 335 47.5
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.1e-60 236.5 337 48.7
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 3.1e-60 236.5 349 46.1
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.3e-60 235.7 339 48.1
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.3e-60 235.7 335 47.2
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 6.9e-60 235.3 338 48.5
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 9.1e-60 235.0 335 49.0
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.1e-60 235.0 371 47.4
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.5e-59 234.2 366 45.9
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.0e-59 233.8 340 47.4
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 5.9e-59 232.3 349 46.4
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 5.9e-59 232.3 369 45.3
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 7.7e-59 231.9 333 49.8
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 7.7e-59 231.9 347 47.0
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.0e-58 231.5 349 46.4
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.3e-58 231.1 335 47.2
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.3e-58 231.1 335 47.2
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 2.2e-58 230.3 339 46.0
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 2.2e-58 230.3 340 46.8
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 3.8e-58 229.6 338 45.9
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 6.5e-58 228.8 345 46.7
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 8.5e-58 228.4 338 46.2
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.5e-58 228.4 335 46.9
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.5e-58 228.4 335 46.3
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.1e-57 228.0 345 46.1
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 2.5e-57 226.9 344 47.1
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 2.5e-57 226.9 344 47.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.5e-57 226.9 338 47.0
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 3.2e-57 226.5 350 46.0
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 7.2e-57 225.3 338 45.9
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.6e-56 224.2 337 46.6
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 2.1e-56 223.8 346 45.4
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 2.7e-56 223.4 342 44.7
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 4.7e-56 222.6 343 47.2
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 6.1e-56 222.2 335 44.8
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 7.9e-56 221.9 362 44.2
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 7.9e-56 221.9 347 47.0
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 7.9e-56 221.9 333 46.2
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.0e-55 221.5 353 45.0
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 3.9e-55 219.5 325 47.1
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 5.1e-55 219.2 348 45.4
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 6.7e-55 218.8 359 44.6
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 8.8e-55 218.4 339 45.4
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 8.8e-55 218.4 335 45.1
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.1e-54 218.0 328 47.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.6e-54 216.9 352 45.7
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.6e-54 216.9 345 46.1
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 3.3e-54 216.5 352 47.4
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.3e-54 216.5 335 46.0
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 5.7e-54 215.7 340 44.4
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.3e-53 214.5 337 43.9
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 3.7e-53 213.0 340 45.0
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 3.7e-53 213.0 340 45.0
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 6.3e-53 212.2 330 45.8
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 6.3e-53 212.2 330 45.8
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 6.3e-53 212.2 344 43.6
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 1.4e-52 211.1 328 46.3
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 4.1e-52 209.5 336 44.6
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 7.0e-52 208.8 364 45.3
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 7.0e-52 208.8 332 43.4
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 7.0e-52 208.8 370 41.4
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 9.1e-52 208.4 335 43.0
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 2.0e-51 207.2 351 44.7
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.6e-51 206.8 336 43.8
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.5e-51 206.5 347 41.8
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 7.7e-51 205.3 355 43.1
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.0e-50 204.9 334 44.3
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.3e-50 204.5 334 42.5
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 5.0e-50 202.6 337 41.8
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.9e-49 200.7 340 43.8
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.9e-49 200.7 349 41.5
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.5e-49 200.3 372 40.6
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 9.4e-49 198.4 342 43.0
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.6e-48 197.6 348 42.8
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 2.1e-48 197.2 337 41.8
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 8.0e-48 195.3 330 41.2
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.0e-48 195.3 352 41.2
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.0e-48 195.3 352 41.2
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 3.0e-47 193.4 348 42.2
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 5.2e-47 192.6 341 41.9
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.8e-45 186.8 344 41.9
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 2.8e-45 186.8 348 40.2
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.1e-44 183.0 340 40.3
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.6e-43 181.0 354 39.0
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.2e-41 173.3 375 36.3
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 7.2e-41 172.2 310 41.3
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 7.2e-41 172.2 355 40.0
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 4.0e-39 166.4 339 38.3
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 3.4e-38 163.3 221 54.3
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 5.4e-36 156.0 339 41.0
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 7.7e-35 152.1 293 39.2
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 1.5e-33 147.9 275 43.3
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 3.2e-33 146.7 266 45.1
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 8.0e-32 142.1 310 38.1
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.8e-31 141.0 130 64.6
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 3.0e-31 140.2 358 35.5
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 9.8e-30 135.2 150 54.0
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 8.3e-29 132.1 286 36.0
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 7.0e-28 129.0 357 36.4
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 9.1e-28 128.6 272 41.2
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.3e-26 124.8 320 37.2
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 5.0e-26 122.9 352 34.1
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 8.6e-26 122.1 344 33.7
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 3.3e-25 120.2 97 68.0
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 5.6e-25 119.4 313 36.7
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 9.5e-25 118.6 286 36.0
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 5.2e-23 112.8 325 32.6
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 5.2e-23 112.8 168 42.9
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.5e-22 111.3 213 41.8
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 2.9e-21 107.1 343 31.8
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.1e-20 103.2 168 44.0
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.5e-17 94.7 99 53.5
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 5.6e-17 92.8 299 30.4
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 8.0e-16 89.0 307 32.2
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 7.5e-14 82.4 426 27.9
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.4e-12 77.4 101 52.5
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 4.1e-12 76.6 333 28.8
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.2e-11 75.1 133 39.8
MSTRG.10449 Avicennia marina HOM05D004638 ORTHO05D005443 2.0e-11 74.3 90 55.6
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.5e-11 73.6 80 56.2
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 8.1e-08 62.4 54 57.4
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.4e-07 61.6 196 35.2
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 5.2e-07 59.7 137 40.1
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 3.4e-06 57.0 44 61.4


User provided reference genes

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