Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 1.1e-91 340.1 187 100.0
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 6.4e-28 128.3 98 71.4
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 3.3e-24 115.9 161 50.9
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.8e-22 110.2 97 61.9
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.3e-22 109.8 94 62.8
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.3e-22 109.8 94 62.8
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 3.4e-21 105.9 98 59.2
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 4.4e-21 105.5 93 63.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 9.8e-21 104.4 90 63.3
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.3e-20 104.0 89 64.0
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.3e-20 104.0 93 61.3
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.7e-20 103.6 94 60.6
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.9e-20 102.8 219 43.4
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 8.3e-20 101.3 94 58.5
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 8.3e-20 101.3 91 60.4
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.4e-19 100.5 89 64.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.4e-19 100.5 89 62.9
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.4e-19 100.5 91 59.3
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.9e-19 100.1 88 62.5
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.4e-19 99.8 91 59.3
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 5.4e-19 98.6 85 63.5
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 9.2e-19 97.8 88 60.2
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 9.2e-19 97.8 89 61.8
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 1.2e-18 97.4 85 62.4
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-18 97.4 85 62.4
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 1.2e-18 97.4 91 57.1
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.2e-18 97.4 86 64.0
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-18 97.1 93 59.1
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-18 97.1 93 59.1
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.6e-18 97.1 93 59.1
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.1e-18 96.7 88 62.5
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.1e-18 96.7 88 59.1
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 3.5e-18 95.9 88 60.2
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 4.6e-18 95.5 86 60.5
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 6.0e-18 95.1 88 59.1
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 7.8e-18 94.7 88 59.1
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 7.8e-18 94.7 86 59.3
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 7.8e-18 94.7 87 59.8
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.3e-17 94.0 93 60.2
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.7e-17 93.6 89 61.8
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.7e-17 93.6 89 58.4
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.7e-17 93.6 89 58.4
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.7e-17 93.6 85 61.2
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.7e-17 93.6 94 56.4
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.7e-17 93.6 144 49.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.3e-17 93.2 96 57.3
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.3e-17 93.2 88 54.5
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.0e-17 92.8 88 56.8
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.0e-17 92.8 87 59.8
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 3.9e-17 92.4 84 61.9
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.9e-17 92.4 89 60.7
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 3.9e-17 92.4 90 55.6
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.9e-17 92.4 92 57.6
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 8.6e-17 91.3 60 78.3
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 8.6e-17 91.3 94 57.4
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 8.6e-17 91.3 94 52.1
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 8.6e-17 91.3 60 75.0
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 8.6e-17 91.3 172 42.4
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.1e-16 90.9 91 51.6
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.1e-16 90.9 91 51.6
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.1e-16 90.9 86 57.0
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.1e-16 90.9 86 60.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.1e-16 90.9 89 58.4
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.9e-16 90.1 98 53.1
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.5e-16 89.7 92 57.6
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.5e-16 89.7 170 42.9
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.5e-16 89.7 84 59.5
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.3e-16 89.0 89 59.6
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 5.6e-16 88.6 179 42.5
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 5.6e-16 88.6 88 56.8
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 7.3e-16 88.2 91 53.8
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 9.5e-16 87.8 84 56.0
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 9.5e-16 87.8 84 57.1
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 9.5e-16 87.8 84 56.0
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 9.5e-16 87.8 84 56.0
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 9.5e-16 87.8 90 57.8
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-15 87.4 84 57.1
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.2e-15 87.4 84 57.1
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.2e-15 87.4 89 56.2
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.6e-15 87.0 58 75.9
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.8e-15 86.3 73 61.6
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.8e-15 86.3 83 59.0
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.6e-15 85.9 90 57.8
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.7e-15 85.5 85 56.5
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 4.7e-15 85.5 84 58.3
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 4.7e-15 85.5 77 59.7
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 6.2e-15 85.1 162 42.6
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 8.1e-15 84.7 91 54.9
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.1e-14 84.3 196 38.8
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.1e-14 84.3 83 56.6
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.4e-14 84.0 84 56.0
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.4e-14 84.0 84 56.0
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.4e-14 84.0 91 56.0
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.3e-14 83.2 82 57.3
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.3e-14 83.2 73 58.9
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.0e-14 82.4 157 43.3
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 4.0e-14 82.4 61 70.5
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 4.0e-14 82.4 58 70.7
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 4.0e-14 82.4 73 57.5
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 5.2e-14 82.0 80 53.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 8.9e-14 81.3 88 52.3
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.2e-13 80.9 67 64.2
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.0e-13 80.1 69 60.9
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.0e-13 80.1 97 50.5
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 3.4e-13 79.3 80 56.2
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 3.4e-13 79.3 80 57.5
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.6e-13 78.2 77 53.2
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.7e-12 77.0 132 40.9
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.7e-12 77.0 83 49.4
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 4.9e-12 75.5 75 56.0
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 4.9e-12 75.5 74 58.1
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 6.4e-12 75.1 63 58.7
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 1.1e-11 74.3 78 56.4
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.9e-11 73.6 79 53.2
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.4e-11 73.2 69 55.1
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 3.2e-11 72.8 86 48.8
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 5.4e-11 72.0 78 53.8
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 7.1e-11 71.6 71 54.9
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 7.1e-11 71.6 116 40.5
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 9.2e-11 71.2 139 43.2
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.2e-10 70.9 81 50.6
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.1e-10 70.1 109 40.4
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 3.5e-10 69.3 47 72.3
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.8e-10 68.2 89 50.6
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.3e-09 67.4 100 41.0
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.7e-09 67.0 65 56.9
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.3e-09 66.6 82 48.8
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.0e-09 66.2 198 31.8
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.0e-09 66.2 90 45.6
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.9e-09 65.9 89 47.2
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 5.1e-09 65.5 198 31.8
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 5.1e-09 65.5 87 46.0
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.1e-09 65.5 178 36.0
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 8.6e-09 64.7 56 62.5
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 8.6e-09 64.7 48 64.6
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 8.6e-09 64.7 93 43.0
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.1e-08 64.3 89 44.9
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.5e-08 63.9 82 43.9
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.5e-08 63.9 83 48.2
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.5e-08 63.9 146 41.8
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.9e-08 63.5 87 43.7
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 2.5e-08 63.2 167 35.3
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 7.3e-08 61.6 43 74.4
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 7.3e-08 61.6 92 40.2
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.2e-07 60.8 67 47.8
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.2e-07 60.8 78 46.2
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.6e-07 60.5 42 73.8
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.1e-07 60.1 47 63.8
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.1e-07 60.1 39 76.9
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 2.8e-07 59.7 83 41.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 4.7e-07 58.9 68 52.9
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 8.1e-07 58.2 50 56.0
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.1e-06 57.8 98 39.8
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.1e-06 57.8 169 35.5
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.8e-06 57.0 85 38.8
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 3.1e-06 56.2 92 40.2
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 8.9e-06 54.7 50 54.0


User provided reference genes

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