Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09406 Striga asiatica HOM05D003567 ORTHO05D004117 1.8e-196 689.1 358 100.0
Migut.L01511 Erythranthe guttata HOM05D003567 ORTHO05D004117 6.5e-106 388.3 350 63.4
SalBow1G7230 Salvia bowleyana HOM05D003567 ORTHO05D004117 2.6e-78 296.6 349 52.4
Oeu033946.2 Olea europaea HOM05D003567 ORTHO05D004117 3.6e-72 276.2 362 49.4
Dinv40231 Davidia involucrata HOM05D003567 ORTHO05D004117 4.0e-71 272.7 323 51.4
Nitab4.5_0006272g0050 Nicotiana tabacum HOM05D003567 ORTHO05D004117 2.6e-62 243.4 333 46.5
GSVIVG01022012001 Vitis vinifera HOM05D003567 ORTHO05D004117 1.6e-59 234.2 327 48.0
Solyc08g042140.3 Solanum lycopersicum HOM05D003567 ORTHO05D004117 7.8e-59 231.9 323 44.6
TAR365G0081 Trochodendron aralioides HOM05D003567 ORTHO05D004117 3.9e-58 229.6 321 44.5
Actinidia30900 Actinidia chinensis HOM05D003567 ORTHO05D004117 1.6e-56 224.2 278 46.8
Nitab4.5_0000027g0510 Nicotiana tabacum HOM05D003567 ORTHO05D004117 1.6e-56 224.2 304 48.4
Peaxi162Scf00071g00838 Petunia axillaris HOM05D003567 ORTHO05D004117 1.1e-52 211.5 313 42.8
Nn3g21221 Nelumbo nucifera HOM05D003567 ORTHO05D004117 7.8e-51 205.3 317 42.9
DCAR_003305 Daucus carota HOM05D003567 ORTHO05D004117 1.7e-50 204.1 315 43.2
THA.LOC104805845 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 1.1e-49 201.4 312 42.6
PGR031G3379 Punica granatum HOM05D003567 ORTHO05D004117 2.5e-49 200.3 313 43.1
Aa31LG2G12110 Aethionema arabicum HOM05D003567 ORTHO05D004117 2.1e-48 197.2 316 41.8
Lj9A677G34 Lonicera japonica HOM05D003567 ORTHO05D004117 1.5e-46 191.0 316 41.8
Sed0008957 Sechium edule HOM05D003567 ORTHO05D004117 1.5e-46 191.0 335 38.5
Aqoxy2G03162 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 2.6e-46 190.3 319 42.0
Eucgr.H04432 Eucalyptus grandis HOM05D003567 ORTHO05D004117 2.2e-45 187.2 315 41.0
Duzib106G0722 Durio zibethinus HOM05D003567 ORTHO05D004117 1.1e-44 184.9 313 39.9
Carub.0002s0892 Capsella rubella HOM05D003567 ORTHO05D004117 1.4e-44 184.5 316 38.6
Cpa.g.sc84.116 Carica papaya HOM05D003567 ORTHO05D004117 7.1e-44 182.2 321 38.0
CAN.G566.56 Capsicum annuum HOM05D003567 ORTHO05D004117 9.3e-44 181.8 312 41.0
AL1G65120 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 3.5e-43 179.9 316 39.9
ECA246G0369 Erigeron canadensis HOM05D003567 ORTHO05D004117 6.0e-43 179.1 332 38.0
PSO170G0922 Papaver somniferum HOM05D003567 ORTHO05D004117 1.0e-42 178.3 311 38.9
Thhalv10023619m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 3.0e-42 176.8 317 39.4
SpUn0002_0170 Schrenkiella parvula HOM05D003567 ORTHO05D004117 6.7e-42 175.6 316 40.2
CARHR055820 Cardamine hirsuta HOM05D003567 ORTHO05D004117 1.9e-41 174.1 317 38.5
Cc02_g32780 Coffea canephora HOM05D003567 ORTHO05D004117 1.9e-41 174.1 205 46.8
AT1G54680 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 7.4e-41 172.2 316 38.3
ClCG03G016600 Citrullus lanatus HOM05D003567 ORTHO05D004117 1.6e-40 171.0 357 35.9
BcaB04g20139 Brassica carinata HOM05D003567 ORTHO05D004117 1.1e-39 168.3 315 38.7
vmacro05046 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 3.4e-38 163.3 200 48.5
MSTRG.10546 Avicennia marina HOM05D003567 ORTHO05D004117 1.3e-37 161.4 116 69.8
BraA01t02844Z Brassica rapa HOM05D003567 ORTHO05D004117 1.7e-37 161.0 315 38.7
HanXRQChr12g0379821 Helianthus annuus HOM05D003567 ORTHO05D004117 1.7e-37 161.0 313 37.7
BcaC09g49610 Brassica carinata HOM05D003567 ORTHO05D004117 6.4e-37 159.1 316 38.0
C01p34500 Brassica napus HOM05D003567 ORTHO05D004117 6.4e-37 159.1 316 38.0
BolC1t03421H Brassica oleracea HOM05D003567 ORTHO05D004117 6.4e-37 159.1 316 38.0
BcaC05g25942 Brassica carinata HOM05D003567 ORTHO05D004117 4.2e-36 156.4 309 38.5
PSO302G0249 Papaver somniferum HOM05D003567 ORTHO05D004117 5.5e-36 156.0 334 35.6
Rhsim07G0178200 Rhododendron simsii HOM05D003567 ORTHO05D004117 7.9e-35 152.1 172 50.6
Sopen08g012740 Solanum pennellii HOM05D003567 ORTHO05D004117 3.4e-30 136.7 224 39.7
Cpa.g.sc84.115 Carica papaya HOM05D003567 ORTHO05D004117 1.0e-29 135.2 344 33.4
Gohir.D11G270600 Gossypium hirsutum HOM05D003567 ORTHO05D004117 4.9e-29 132.9 354 32.5
Gorai.007G291100 Gossypium raimondii HOM05D003567 ORTHO05D004117 4.9e-29 132.9 354 32.5
AUR62000902 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.1e-28 131.7 314 34.4
COL.COLO4_13563 Corchorus olitorius HOM05D003567 ORTHO05D004117 1.9e-28 131.0 354 32.2
CsaV3_1G039390 Cucumis sativus L. HOM05D003567 ORTHO05D004117 1.9e-28 131.0 177 44.6
Sabra13G0029300 Salix brachista HOM05D003567 ORTHO05D004117 1.9e-28 131.0 356 32.3
TPR.G21793 Trifolium pratense HOM05D003567 ORTHO05D004117 2.5e-28 130.6 343 30.0
AUR62005073 Chenopodium quinoa HOM05D003567 ORTHO05D004117 3.2e-28 130.2 342 31.0
PGR031G0264 Punica granatum HOM05D003567 ORTHO05D004117 3.2e-28 130.2 348 32.5
Ciclev10001775m.g Citrus clementina HOM05D003567 ORTHO05D004117 9.3e-28 128.6 356 31.5
Thecc.05G296900 Theobroma cacao HOM05D003567 ORTHO05D004117 1.2e-27 128.3 345 31.3
TAR362G0113 Trochodendron aralioides HOM05D003567 ORTHO05D004117 1.2e-27 128.3 325 32.3
Aqoxy2G03161 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 2.1e-27 127.5 345 32.2
Medtr7g114070 Medicago truncatula HOM05D003567 ORTHO05D004117 2.1e-27 127.5 378 28.8
Potri.013G029000 Populus trichocarpa HOM05D003567 ORTHO05D004117 4.6e-27 126.3 356 31.2
Duzib177G1144 Durio zibethinus HOM05D003567 ORTHO05D004117 6.0e-27 125.9 350 30.6
Eucgr.H04431 Eucalyptus grandis HOM05D003567 ORTHO05D004117 7.9e-27 125.6 347 31.4
Nn3g21224 Nelumbo nucifera HOM05D003567 ORTHO05D004117 7.9e-27 125.6 363 30.6
arahy.Tifrunner.gnm1.ann1.BBX3WJ Arachis hypogaea HOM05D003567 ORTHO05D004117 1.0e-26 125.2 339 30.7
Manes.08G124900 Manihot esculenta HOM05D003567 ORTHO05D004117 1.0e-26 125.2 345 31.6
arahy.Tifrunner.gnm1.ann1.86SZEE Arachis hypogaea HOM05D003567 ORTHO05D004117 1.3e-26 124.8 339 29.8
EL10Ac4g09285 Beta vulgaris HOM05D003567 ORTHO05D004117 1.3e-26 124.8 346 29.8
CANSAT54G0395 Cannabis sativa HOM05D003567 ORTHO05D004117 1.8e-26 124.4 346 30.9
PGSC0003DMG400010083 Solanum tuberosum HOM05D003567 ORTHO05D004117 1.8e-26 124.4 339 31.9
Sopen02g034720 Solanum pennellii HOM05D003567 ORTHO05D004117 2.3e-26 124.0 339 31.9
Rhsim05G0146400 Rhododendron simsii HOM05D003567 ORTHO05D004117 3.0e-26 123.6 356 31.2
Lsat_1_v5_gn_5_39020 Lactuca sativa HOM05D003567 ORTHO05D004117 5.1e-26 122.9 205 44.9
GSVIVG01022011001 Vitis vinifera HOM05D003567 ORTHO05D004117 5.1e-26 122.9 343 33.2
Aa31LG11G9050 Aethionema arabicum HOM05D003567 ORTHO05D004117 6.7e-26 122.5 343 30.6
BcaB04g19661 Brassica carinata HOM05D003567 ORTHO05D004117 6.7e-26 122.5 347 31.4
Cc02_g32800 Coffea canephora HOM05D003567 ORTHO05D004117 6.7e-26 122.5 349 33.2
BolC9t53498H Brassica oleracea HOM05D003567 ORTHO05D004117 8.7e-26 122.1 347 32.3
Thhalv10004533m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 8.7e-26 122.1 343 30.9
Sed0017789 Sechium edule HOM05D003567 ORTHO05D004117 8.7e-26 122.1 358 31.3
Atru.chr2.536 Acer truncatum HOM05D003567 ORTHO05D004117 1.1e-25 121.7 345 30.7
Lj1g0016651 Lotus japonicus HOM05D003567 ORTHO05D004117 1.5e-25 121.3 370 29.5
MD04G1212700 Malus domestica HOM05D003567 ORTHO05D004117 1.5e-25 121.3 346 32.4
C09p05690 Brassica napus HOM05D003567 ORTHO05D004117 1.9e-25 120.9 347 32.3
BcaB04g19664 Brassica carinata HOM05D003567 ORTHO05D004117 2.5e-25 120.6 347 32.0
BcaC04g23684 Brassica carinata HOM05D003567 ORTHO05D004117 2.5e-25 120.6 347 32.0
BraA09t36162Z Brassica rapa HOM05D003567 ORTHO05D004117 2.5e-25 120.6 347 32.0
CSS0000473 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 2.5e-25 120.6 342 30.7
CSS0010999 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 2.5e-25 120.6 342 30.7
THA.LOC104802813 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 2.5e-25 120.6 345 30.4
A09p05230 Brassica napus HOM05D003567 ORTHO05D004117 3.3e-25 120.2 347 32.3
VMungo0540G1876 Vigna mungo HOM05D003567 ORTHO05D004117 4.3e-25 119.8 344 29.1
Hund07025 Selenicereus undatus HOM05D003567 ORTHO05D004117 5.7e-25 119.4 372 29.3
ClCG03G016590 Citrullus lanatus HOM05D003567 ORTHO05D004117 7.4e-25 119.0 364 32.7
PSO302G0281 Papaver somniferum HOM05D003567 ORTHO05D004117 7.4e-25 119.0 343 30.3
RcHm_v2.0_Chr3g0453431 Rosa chinensis HOM05D003567 ORTHO05D004117 7.4e-25 119.0 346 31.2
Os01g0382700 Oryza sativa ssp. japonica HOM05D003567 ORTHO05D004117 1.3e-24 118.2 365 29.9
CAN.G836.16 Capsicum annuum HOM05D003567 ORTHO05D004117 1.6e-24 117.9 335 31.6
Ca_09384_v3 Cicer arietinum L. HOM05D003567 ORTHO05D004117 1.6e-24 117.9 370 29.5
MELO3C029314.2 Cucumis melo HOM05D003567 ORTHO05D004117 1.6e-24 117.9 194 40.7
FvH4_6g04940 Fragaria vesca HOM05D003567 ORTHO05D004117 1.6e-24 117.9 343 29.4
BcaC04g23687 Brassica carinata HOM05D003567 ORTHO05D004117 2.2e-24 117.5 347 31.4
DCAR_016974 Daucus carota HOM05D003567 ORTHO05D004117 2.8e-24 117.1 338 31.1
Glyma.03G241900 Glycine max HOM05D003567 ORTHO05D004117 2.8e-24 117.1 345 28.4
Psat3g009280 Pisum sativum HOM05D003567 ORTHO05D004117 2.8e-24 117.1 343 28.9
Nitab4.5_0008257g0040 Nicotiana tabacum HOM05D003567 ORTHO05D004117 3.7e-24 116.7 335 29.9
Phvul.006G095900 Phaseolus vulgaris HOM05D003567 ORTHO05D004117 3.7e-24 116.7 342 28.9
ATR0487G007 Amborella trichopoda HOM05D003567 ORTHO05D004117 6.3e-24 115.9 343 30.9
AT5G27290 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 1.1e-23 115.2 342 29.5
Lalb_Chr18g0045341 Lupinus albus HOM05D003567 ORTHO05D004117 1.1e-23 115.2 374 26.7
CDE05G1895 Ceratophyllum demersum HOM05D003567 ORTHO05D004117 1.4e-23 114.8 367 29.7
FAN14G3462 Fragaria x ananassa HOM05D003567 ORTHO05D004117 1.4e-23 114.8 343 29.2
SGA_v2.0_scaffold21G09407 Striga asiatica HOM05D003567 ORTHO05D004117 1.4e-23 114.8 342 30.1
PSO170G0105 Papaver somniferum HOM05D003567 ORTHO05D004117 1.8e-23 114.4 369 29.0
SalBow1G3301 Salvia bowleyana HOM05D003567 ORTHO05D004117 1.8e-23 114.4 344 30.8
QL03p002916 Quercus lobata HOM05D003567 ORTHO05D004117 2.4e-23 114.0 372 29.6
QL03p003527 Quercus lobata HOM05D003567 ORTHO05D004117 2.4e-23 114.0 387 29.7
CsaV3_1G039400 Cucumis sativus L. HOM05D003567 ORTHO05D004117 4.1e-23 113.2 357 30.3
AL6G39790 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 1.2e-22 111.7 347 29.4
Cfa006520 Carpinus fangiana HOM05D003567 ORTHO05D004117 1.5e-22 111.3 349 29.2
unitig_578.g16416 Utricularia gibba HOM05D003567 ORTHO05D004117 1.5e-22 111.3 360 30.0
Carub.0006s2522 Capsella rubella HOM05D003567 ORTHO05D004117 2.0e-22 110.9 345 29.0
CARHR185910 Cardamine hirsuta HOM05D003567 ORTHO05D004117 2.0e-22 110.9 342 29.2
PSO170G3637 Papaver somniferum HOM05D003567 ORTHO05D004117 2.0e-22 110.9 343 29.7
Sp2g20530 Schrenkiella parvula HOM05D003567 ORTHO05D004117 2.0e-22 110.9 344 30.2
Sc06g0003450 Simmondsia chinensis HOM05D003567 ORTHO05D004117 2.6e-22 110.5 377 28.4
Lsat_1_v5_gn_5_38921 Lactuca sativa HOM05D003567 ORTHO05D004117 3.4e-22 110.2 355 30.4
Sopen08g012750 Solanum pennellii HOM05D003567 ORTHO05D004117 5.9e-22 109.4 111 54.1
HanXRQChr16g0512311 Helianthus annuus HOM05D003567 ORTHO05D004117 7.7e-22 109.0 355 30.1
Lj9A677T42 Lonicera japonica HOM05D003567 ORTHO05D004117 7.7e-22 109.0 389 28.0
ECA246G1301 Erigeron canadensis HOM05D003567 ORTHO05D004117 1.0e-21 108.6 339 30.1
Nitab4.5_0000327g0090 Nicotiana tabacum HOM05D003567 ORTHO05D004117 1.7e-21 107.8 335 29.6
Migut.L01512 Erythranthe guttata HOM05D003567 ORTHO05D004117 3.8e-21 106.7 339 29.8
SEGI_02572 Sequoiadendron giganteum HOM05D003567 ORTHO05D004117 1.1e-20 105.1 341 28.7
AL7G51030 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 1.4e-20 104.8 173 41.0
Oeu025239.1 Olea europaea HOM05D003567 ORTHO05D004117 9.4e-20 102.1 382 27.5
Glyma.19G239300 Glycine max HOM05D003567 ORTHO05D004117 1.8e-18 97.8 202 29.7
A01p27100 Brassica napus HOM05D003567 ORTHO05D004117 6.7e-18 95.9 172 41.3
CiPaw.08G174300 Carya illinoinensis HOM05D003567 ORTHO05D004117 6.7e-18 95.9 265 30.9
Haze_04266 Corylus avellana HOM05D003567 ORTHO05D004117 2.5e-17 94.0 381 26.8
Peaxi162Scf00338g00312 Petunia axillaris HOM05D003567 ORTHO05D004117 3.7e-16 90.1 319 28.5
SMO367G0890 Selaginella moellendorffii HOM05D003567 ORTHO05D004117 3.7e-16 90.1 340 28.2
Solyc02g090020.4 Solanum lycopersicum HOM05D003567 ORTHO05D004117 4.5e-14 83.2 309 29.1
PSO302G0180 Papaver somniferum HOM05D003567 ORTHO05D004117 5.9e-14 82.8 298 28.5
Actinidia19813 Actinidia chinensis HOM05D003567 ORTHO05D004117 7.7e-14 82.4 282 29.4
CBR_g53664 Chara braunii HOM05D003567 ORTHO05D004117 2.2e-13 80.9 338 26.9
vmacro19654 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 3.8e-13 80.1 422 27.3
CiPaw.08G174900 Carya illinoinensis HOM05D003567 ORTHO05D004117 5.0e-13 79.7 316 27.2
MELO3C029313.2 Cucumis melo HOM05D003567 ORTHO05D004117 1.4e-12 78.2 94 46.8
Prupe.6G333000 Prunus persica HOM05D003567 ORTHO05D004117 1.4e-12 78.2 208 34.6
C05p18930 Brassica napus HOM05D003567 ORTHO05D004117 1.9e-12 77.8 147 40.1
Gohir.A11G260300 Gossypium hirsutum HOM05D003567 ORTHO05D004117 4.2e-12 76.6 219 32.9
MELO3C015365.2 Cucumis melo HOM05D003567 ORTHO05D004117 5.5e-12 76.3 373 26.5
Manes.09G161401 Manihot esculenta HOM05D003567 ORTHO05D004117 1.2e-11 75.1 97 44.3
Cc02_g32790 Coffea canephora HOM05D003567 ORTHO05D004117 1.6e-11 74.7 105 46.7
Mapoly0059s0075 Marchantia polymorpha HOM05D003567 ORTHO05D004117 2.1e-11 74.3 200 28.5
Dinv22925 Davidia involucrata HOM05D003567 ORTHO05D004117 3.6e-11 73.6 215 32.6
AUR62033882 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.4e-10 71.6 246 30.5
CiPaw.08G171500 Carya illinoinensis HOM05D003567 ORTHO05D004117 1.8e-10 71.2 192 27.1
AagrBONN_evm.TU.Sc2ySwM_344.4623 Anthoceros agrestis HOM05D003567 ORTHO05D004117 2.3e-10 70.9 189 30.7
CiPaw.08G170300 Carya illinoinensis HOM05D003567 ORTHO05D004117 8.8e-10 68.9 211 30.8
Duzib128G1838 Durio zibethinus HOM05D003567 ORTHO05D004117 8.8e-10 68.9 85 42.4
DCAR_031426 Daucus carota HOM05D002608 ORTHO05D013040 5.7e-09 66.2 46 56.5
AUR62025002 Chenopodium quinoa HOM05D003567 ORTHO05D004117 7.4e-09 65.9 201 27.9
AUR62030520 Chenopodium quinoa HOM05D003567 ORTHO05D004117 7.4e-09 65.9 201 27.9
AUR62032573 Chenopodium quinoa HOM05D003567 ORTHO05D004117 7.4e-09 65.9 201 27.9
AUR62037588 Chenopodium quinoa HOM05D003567 ORTHO05D004117 7.4e-09 65.9 201 27.9
AUR62026190 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.7e-08 64.7 93 41.9
MCO11G582 Micromonas commoda HOM05D003567 ORTHO05D004117 1.7e-08 64.7 307 26.1
CiPaw.08G171000 Carya illinoinensis HOM05D003567 ORTHO05D004117 2.2e-08 64.3 169 26.6
MBI10_g37183_MAGBIO Magnolia biondii HOM05D003567 ORTHO05D004117 3.7e-08 63.5 85 41.2
PRCOL_00003025 Prasinoderma coloniale HOM05D003567 ORTHO05D004117 6.3e-08 62.8 197 28.4
Zm00001eb131930 Zea mays HOM05D003567 ORTHO05D004117 5.3e-07 59.7 192 28.1


User provided reference genes

Program Settings