Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.4e-275 952.2 453 100.0
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 9.1e-246 853.2 451 87.6
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.4e-245 851.3 451 87.4
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 7.2e-243 843.6 451 86.3
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.1e-242 840.5 448 85.9
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.2e-241 837.4 449 85.3
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 8.8e-241 836.6 451 86.5
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-240 835.5 450 86.2
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 2.6e-240 835.1 449 85.3
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 3.3e-240 834.7 451 86.5
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.4e-240 834.3 450 85.6
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 5.7e-240 833.9 453 85.9
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 5.7e-240 833.9 451 85.8
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 7.4e-240 833.6 451 86.0
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.7e-240 833.2 453 85.2
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 9.7e-240 833.2 453 85.7
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-239 832.8 453 84.3
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.2e-239 832.0 448 85.3
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 6.3e-239 830.5 451 85.1
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.1e-238 828.2 453 85.0
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.5e-237 824.3 460 84.1
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.0e-236 823.2 450 85.1
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.0e-236 823.2 450 84.4
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.9e-236 821.6 453 84.1
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 5.0e-236 820.8 448 85.9
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.2e-234 816.2 451 82.9
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.2e-234 816.2 440 85.0
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.7e-234 815.1 452 83.8
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 3.6e-234 814.7 453 84.1
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 2.3e-233 812.0 451 83.4
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 8.8e-233 810.1 453 83.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.0e-232 808.9 453 83.4
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.4e-232 807.7 433 85.0
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 2.2e-231 805.4 449 81.7
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 2.8e-231 805.1 451 82.9
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 3.7e-231 804.7 451 82.0
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 4.8e-231 804.3 446 84.3
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 4.8e-231 804.3 446 84.3
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 4.8e-231 804.3 448 83.3
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 6.3e-231 803.9 447 83.4
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 6.3e-231 803.9 451 82.9
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 8.2e-231 803.5 451 83.4
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.1e-230 803.1 443 83.1
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.1e-230 803.1 453 82.3
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.8e-230 802.4 453 82.8
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.4e-230 802.0 451 81.8
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.4e-230 802.0 444 84.0
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.4e-230 802.0 453 82.8
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 7.0e-230 800.4 453 82.8
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 2.0e-229 798.9 445 83.6
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 4.5e-229 797.7 445 82.5
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 5.9e-229 797.3 451 81.2
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 7.7e-229 797.0 451 81.4
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.3e-228 796.2 451 81.2
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.3e-228 796.2 451 81.2
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.7e-228 795.8 451 82.7
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 2.2e-228 795.4 451 82.0
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 2.2e-228 795.4 451 80.5
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.9e-228 795.0 450 81.6
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.8e-228 794.7 451 80.7
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 6.5e-228 793.9 451 81.8
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.5e-227 792.7 453 82.1
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.9e-227 792.3 451 81.6
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.9e-227 792.3 457 81.2
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.5e-227 792.0 451 81.8
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 2.5e-227 792.0 448 82.8
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 3.2e-227 791.6 451 80.3
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 4.2e-227 791.2 451 81.8
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 7.2e-227 790.4 451 80.5
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 9.4e-227 790.0 451 80.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.6e-226 789.3 446 81.6
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.0e-225 786.6 451 80.3
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.0e-225 786.6 451 80.5
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.4e-225 786.2 428 84.3
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.4e-225 786.2 451 80.7
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.4e-225 786.2 444 82.7
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.8e-225 785.8 445 81.1
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 8.8e-225 783.5 451 80.3
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.2e-224 783.1 453 81.9
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.5e-224 782.7 451 80.5
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 3.4e-224 781.6 451 80.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 4.4e-224 781.2 451 80.7
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.7e-223 779.2 443 80.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.2e-223 778.9 445 81.1
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 6.3e-223 777.3 449 80.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 4.1e-222 774.6 451 79.8
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.4e-222 774.2 451 79.6
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 7.0e-222 773.9 482 75.9
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.2e-221 773.1 447 80.5
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.2e-221 773.1 469 76.8
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.2e-221 773.1 453 80.8
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.6e-221 772.7 448 79.2
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.6e-221 772.7 449 79.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.7e-221 771.9 496 74.8
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 3.8e-220 768.1 451 78.3
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 8.6e-220 766.9 451 78.0
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.1e-218 762.3 451 77.6
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 2.1e-218 762.3 444 81.1
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 3.6e-218 761.5 451 77.6
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 4.7e-218 761.1 451 77.6
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 4.7e-218 761.1 451 77.6
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 8.0e-218 760.4 451 77.6
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 2.3e-217 758.8 451 78.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.1e-214 750.0 412 83.7
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.4e-214 749.6 451 78.7
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 5.9e-213 744.2 445 78.9
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.7e-212 742.7 445 78.0
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 2.8e-210 735.3 451 76.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 4.3e-203 711.4 451 72.9
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 9.5e-203 710.3 446 74.4
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.2e-202 709.9 448 73.7
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.4e-198 696.4 448 74.3
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 3.5e-197 691.8 378 85.2
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 7.3e-195 684.1 455 72.5
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 3.6e-194 681.8 388 80.7
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 6.0e-189 664.5 377 80.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.6e-186 655.2 462 69.0
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 9.0e-177 624.0 449 67.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.6e-171 604.7 457 66.3
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 7.3e-171 604.4 331 85.8
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.6e-157 560.1 432 65.0
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 8.4e-151 537.7 297 84.2
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.0e-149 531.6 295 84.7
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.3e-148 529.6 453 59.6
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.9e-147 526.6 316 74.4
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.1e-142 510.8 288 82.3
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.2e-133 480.7 445 57.5
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 4.7e-125 452.2 379 59.4
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.3e-122 441.8 295 69.5
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.6e-104 384.0 280 65.0
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 7.3e-86 322.0 194 74.7
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 8.1e-77 292.0 160 81.9
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.2e-69 265.8 270 49.6
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 5.2e-68 262.7 153 75.8
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-67 261.2 140 86.4
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.9e-66 256.1 153 72.5
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.5e-64 250.0 143 76.9
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.0e-63 248.4 147 78.2
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.1e-60 238.4 147 72.1
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 1.4e-60 238.0 195 62.1
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.9e-58 230.3 156 67.3
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.3e-52 209.5 135 74.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 9.9e-51 205.3 138 71.7
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 2.0e-43 181.0 111 78.4
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.6e-40 169.9 116 67.2
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 1.2e-35 155.2 132 56.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.5e-22 111.7 55 90.9
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.0e-18 99.0 78 61.5
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 5.0e-18 96.7 67 65.7
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 6.5e-18 96.3 74 62.2
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.6e-16 91.7 68 60.3
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.0e-15 89.0 66 57.6
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.8e-15 88.2 73 58.9
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 4.4e-14 83.6 80 53.8
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.7e-14 83.2 67 55.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 6.3e-13 79.7 83 47.0
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 3.1e-12 77.4 48 66.7
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.0e-12 76.3 63 55.6
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 3.2e-09 67.4 41 68.3
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 5.5e-09 66.6 67 49.3
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 1.2e-08 65.5 162 29.6
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.4e-07 62.0 36 75.0


User provided reference genes

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