Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 2.3e-84 315.5 153 100.0
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 8.0e-29 131.0 78 78.2
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-27 127.1 72 76.4
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.5e-27 126.7 66 81.8
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.6e-27 125.9 70 81.4
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.6e-27 125.9 68 79.4
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 7.5e-27 124.4 72 76.4
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 9.8e-27 124.0 66 80.3
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 9.8e-27 124.0 82 68.3
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.3e-26 123.6 66 78.8
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.7e-26 123.2 65 80.0
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.2e-26 122.9 66 83.3
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 3.7e-26 122.1 66 80.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 3.7e-26 122.1 72 75.0
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 4.9e-26 121.7 70 75.7
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 6.4e-26 121.3 66 78.8
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.4e-25 120.2 66 81.8
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.4e-25 120.2 66 78.8
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.9e-25 119.8 66 78.8
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.4e-25 119.4 68 76.5
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.4e-25 119.4 76 72.4
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.2e-25 119.0 66 77.3
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.2e-25 119.0 71 74.6
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.2e-24 117.1 66 77.3
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.2e-24 117.1 66 75.8
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.6e-24 116.7 70 71.4
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 2.0e-24 116.3 66 77.3
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.7e-24 115.9 66 78.8
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.7e-24 115.9 76 65.8
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.5e-24 115.5 70 71.4
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 3.5e-24 115.5 66 75.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.0e-24 114.8 66 74.2
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 6.0e-24 114.8 70 72.9
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.0e-23 114.0 66 78.8
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.3e-23 113.6 66 75.8
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.3e-23 113.6 65 76.9
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.7e-23 113.2 70 68.6
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 2.3e-23 112.8 66 71.2
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 2.3e-23 112.8 72 69.4
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 3.0e-23 112.5 66 75.8
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 3.9e-23 112.1 72 65.3
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 5.0e-23 111.7 65 73.8
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.0e-23 111.7 66 74.2
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 6.6e-23 111.3 78 61.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.1e-22 110.5 65 72.3
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-22 110.2 66 72.7
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.9e-22 109.8 65 73.8
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 3.3e-22 109.0 66 71.2
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 3.3e-22 109.0 66 71.2
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.3e-22 109.0 66 72.7
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.3e-22 108.6 66 72.7
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 4.3e-22 108.6 66 72.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 5.6e-22 108.2 66 71.2
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 5.6e-22 108.2 82 61.0
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 7.3e-22 107.8 66 68.2
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 7.3e-22 107.8 66 71.2
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 9.5e-22 107.5 74 66.2
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 9.5e-22 107.5 70 67.1
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.1e-21 106.3 66 69.7
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.1e-21 106.3 70 67.1
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.1e-21 106.3 65 66.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 3.6e-21 105.5 70 68.6
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.7e-21 105.1 66 68.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.2e-21 104.8 66 65.2
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.2e-21 104.8 66 66.7
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 8.1e-21 104.4 72 63.9
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 8.1e-21 104.4 73 65.8
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 8.1e-21 104.4 66 69.7
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.1e-20 104.0 66 69.7
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.1e-20 104.0 66 69.7
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.4e-20 103.6 66 63.6
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.8e-20 103.2 65 64.6
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.3e-20 102.8 66 66.7
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 2.3e-20 102.8 67 61.2
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.1e-20 102.4 66 68.2
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 3.1e-20 102.4 65 67.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 3.1e-20 102.4 66 68.2
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 4.0e-20 102.1 65 67.7
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 5.2e-20 101.7 66 62.1
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 6.8e-20 101.3 66 68.2
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 8.9e-20 100.9 66 65.2
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 8.9e-20 100.9 66 66.7
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.2e-19 100.5 66 69.7
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.5e-19 100.1 65 63.1
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 2.0e-19 99.8 64 65.6
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.0e-19 99.8 65 66.2
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.0e-19 99.8 65 66.2
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 2.0e-19 99.8 66 66.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.6e-19 99.4 65 69.2
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 3.4e-19 99.0 62 67.7
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 3.4e-19 99.0 66 65.2
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.4e-19 99.0 64 65.6
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 4.4e-19 98.6 66 66.7
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.8e-19 98.2 66 66.7
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 5.8e-19 98.2 66 63.6
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 7.5e-19 97.8 66 68.2
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 7.5e-19 97.8 66 66.7
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 7.5e-19 97.8 66 65.2
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 9.8e-19 97.4 66 66.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 9.8e-19 97.4 66 66.7
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.3e-18 97.1 66 62.1
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.3e-18 97.1 66 63.6
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.3e-18 97.1 62 67.7
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 1.7e-18 96.7 66 63.6
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.9e-18 95.9 55 74.5
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.9e-18 95.9 66 66.7
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 3.7e-18 95.5 66 65.2
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.7e-18 95.5 66 62.1
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 3.7e-18 95.5 66 65.2
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.9e-18 95.1 66 62.1
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 6.4e-18 94.7 66 62.1
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 6.4e-18 94.7 66 62.1
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 6.4e-18 94.7 66 62.1
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 6.4e-18 94.7 66 62.1
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 6.4e-18 94.7 59 66.1
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 8.3e-18 94.4 66 63.6
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.1e-17 94.0 62 66.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.4e-17 93.6 64 67.2
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.9e-17 93.2 66 62.1
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 3.2e-17 92.4 66 57.6
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.4e-17 91.7 62 62.9
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 7.1e-17 91.3 59 67.8
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 7.1e-17 91.3 65 60.0
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 7.1e-17 91.3 65 60.0
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 7.1e-17 91.3 65 60.0
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.2e-16 90.5 65 60.0
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.6e-16 90.1 64 62.5
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.6e-16 90.1 66 60.6
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.1e-16 89.7 59 66.1
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.1e-16 89.7 64 59.4
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 3.5e-16 89.0 65 58.5
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 3.5e-16 89.0 65 58.5
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 4.6e-16 88.6 69 58.0
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 6.0e-16 88.2 54 75.9
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.0e-15 87.4 65 58.5
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.0e-15 87.4 46 80.4
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.3e-15 87.0 64 59.4
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.3e-15 86.3 66 57.6
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.1e-15 85.1 49 73.5
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.5e-14 83.6 63 60.3
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 3.3e-14 82.4 76 51.3
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 8.1e-13 77.8 46 71.7
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.2e-12 75.1 66 56.1
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 8.9e-12 74.3 64 51.6
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.1e-09 65.5 59 49.2
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 2.3e-07 59.7 31 74.2


User provided reference genes

Program Settings