Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 3.0e-131 471.9 237 100.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 2.5e-85 319.3 238 71.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 4.2e-85 318.5 238 71.8
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.2e-84 317.0 238 71.0
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.8e-83 313.2 239 68.6
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.1e-82 310.5 240 70.0
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.5e-82 310.1 240 70.0
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 9.7e-82 307.4 240 67.9
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 9.7e-82 307.4 237 66.7
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.3e-81 307.0 246 66.7
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.7e-81 306.6 239 68.2
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 8.2e-81 304.3 243 67.9
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.1e-80 303.9 244 66.8
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.4e-80 302.8 238 66.8
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.1e-80 302.4 238 66.4
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 4.1e-80 302.0 242 66.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 7.0e-80 301.2 242 66.1
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.5e-79 300.1 238 65.5
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.0e-79 299.7 239 65.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 2.0e-79 299.7 242 65.7
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.6e-79 299.3 242 66.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.6e-79 299.3 237 65.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.6e-79 299.3 237 65.4
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 3.5e-79 298.9 242 66.5
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.7e-79 297.7 237 64.1
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.0e-78 297.4 243 67.1
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.0e-78 297.4 242 65.7
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.0e-78 297.4 237 65.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.3e-78 297.0 243 66.7
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.3e-78 297.0 237 65.0
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.3e-78 297.0 237 65.0
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.2e-78 296.2 246 65.4
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.2e-78 296.2 243 67.1
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.9e-78 295.8 238 67.2
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.8e-78 295.4 237 64.6
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 5.0e-78 295.0 238 65.1
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 5.0e-78 295.0 220 72.7
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 6.5e-78 294.7 243 66.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.5e-78 294.3 241 65.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.5e-78 294.3 241 65.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 8.5e-78 294.3 242 64.9
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.5e-78 294.3 244 66.8
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.1e-77 293.9 238 65.5
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-77 293.9 238 65.5
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-77 293.9 237 65.0
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.5e-77 291.6 247 63.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 7.2e-77 291.2 241 65.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.2e-76 290.4 242 64.5
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 2.7e-76 289.3 244 64.3
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 3.6e-76 288.9 240 63.8
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 4.7e-76 288.5 243 63.0
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 6.1e-76 288.1 243 63.4
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 8.0e-76 287.7 261 60.5
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.4e-75 287.0 241 63.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.8e-75 286.6 241 65.1
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.8e-75 286.6 247 61.9
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 2.3e-75 286.2 240 62.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 8.8e-75 284.3 241 61.4
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 8.8e-75 284.3 248 61.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.1e-74 283.9 247 61.5
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-74 283.9 244 61.9
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.5e-74 283.5 243 61.3
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-74 283.5 253 59.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.6e-74 282.7 246 62.6
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 4.4e-74 282.0 243 61.3
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 4.4e-74 282.0 250 59.6
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 7.4e-74 281.2 242 63.2
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.7e-74 280.8 243 62.6
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.7e-74 280.8 243 62.6
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.3e-73 280.4 248 60.5
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.2e-73 279.6 243 62.1
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 3.7e-73 278.9 248 60.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 6.3e-73 278.1 246 62.6
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 8.2e-73 277.7 249 59.8
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 8.2e-73 277.7 249 59.8
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 8.2e-73 277.7 250 58.4
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.1e-72 277.3 220 65.9
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-72 277.3 249 59.4
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-72 277.3 249 59.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.8e-72 276.6 248 60.1
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.8e-72 276.6 246 59.3
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.8e-72 276.6 245 60.8
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.8e-72 276.6 250 59.2
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 2.4e-72 276.2 243 62.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 3.1e-72 275.8 248 59.7
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.1e-72 275.8 248 59.7
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 3.1e-72 275.8 241 61.8
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.1e-72 275.8 250 58.0
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 4.1e-72 275.4 252 58.7
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 5.3e-72 275.0 248 60.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 5.3e-72 275.0 248 60.1
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 7.0e-72 274.6 248 59.7
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 7.0e-72 274.6 243 61.7
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 9.1e-72 274.2 246 60.2
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 9.1e-72 274.2 246 60.2
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.2e-71 273.9 245 61.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.2e-71 273.9 244 61.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.2e-71 273.9 252 57.1
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.6e-71 273.5 251 60.6
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.0e-71 273.1 240 62.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.6e-71 272.7 247 59.5
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.6e-71 272.7 247 60.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.5e-71 272.3 250 58.4
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.5e-71 271.9 255 59.6
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 5.9e-71 271.6 249 58.6
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 7.7e-71 271.2 249 58.6
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.3e-70 270.4 248 59.3
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.3e-70 270.4 254 58.3
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.7e-70 270.0 247 59.9
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.2e-70 269.6 250 57.6
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 2.2e-70 269.6 251 58.6
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 3.8e-70 268.9 248 58.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.8e-70 268.9 248 58.9
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 5.0e-70 268.5 253 59.7
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-69 267.3 248 58.5
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.9e-69 266.5 247 59.5
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.6e-68 263.5 247 59.1
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.6e-68 263.5 260 56.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.7e-68 261.9 245 57.1
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 8.0e-68 261.2 229 61.6
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 8.0e-68 261.2 247 57.5
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.4e-67 260.4 237 59.1
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.0e-67 259.2 223 62.3
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 8.8e-67 257.7 248 56.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.6e-66 256.1 235 58.7
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.4e-66 255.8 237 58.6
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 4.8e-65 251.9 232 57.3
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 6.3e-65 251.5 232 58.2
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.8e-64 250.0 242 55.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.5e-63 245.7 224 60.3
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 5.9e-63 245.0 246 52.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.8e-62 242.3 231 56.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.0e-62 241.9 230 55.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.1e-61 240.7 229 57.6
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.2e-60 237.3 245 51.0
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.6e-60 235.7 233 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.4e-56 223.8 223 53.4
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.4e-56 223.0 237 51.9
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.4e-56 223.0 231 52.8
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 5.4e-56 221.9 236 54.7
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.2e-55 220.7 248 49.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 4.5e-55 218.8 218 54.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.2e-50 204.1 250 50.0
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.6e-44 183.7 202 51.5
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.2e-43 178.7 171 59.1
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.9e-40 170.2 167 55.7
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 7.3e-37 158.3 220 44.1
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.7e-36 155.6 99 75.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 3.4e-34 149.4 146 60.3
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 4.4e-34 149.1 149 58.4
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.9e-32 143.7 146 58.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 8.6e-30 134.8 238 42.9
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.1e-29 134.4 97 73.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.3e-29 132.5 70 92.9
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.3e-27 126.7 70 74.3
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.0e-26 123.6 70 77.1
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 4.6e-23 112.5 232 33.2
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.3e-22 110.9 240 36.2
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-22 110.5 130 54.6
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 9.6e-21 104.8 152 44.7
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.8e-19 100.5 102 58.8
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 9.9e-18 94.7 102 56.9
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.4e-16 90.9 70 58.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 4.2e-16 89.4 71 63.4
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.3e-14 84.3 74 52.7
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.9e-14 82.8 98 45.9
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.5e-13 80.9 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.9e-13 80.5 53 77.4
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.3e-13 79.7 56 62.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.1e-11 74.7 71 54.9
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 9.9e-10 68.2 72 55.6
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 4.9e-09 65.9 49 59.2


User provided reference genes

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