Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09359 Striga asiatica HOM05D001256 ORTHO05D404556 4.3e-156 554.7 289 100.0
Dinv42313 Davidia involucrata HOM05D001256 ORTHO05D001141 1.2e-09 68.2 35 80.0
Actinidia39721 Actinidia chinensis HOM05D001256 ORTHO05D001141 1.6e-09 67.8 48 62.5
Eucgr.C00901 Eucalyptus grandis HOM05D001256 ORTHO05D001141 2.1e-09 67.4 42 73.8
Lj7A674G31 Lonicera japonica HOM05D001256 ORTHO05D001141 2.1e-09 67.4 32 90.6
Rhsim05G0022300 Rhododendron simsii HOM05D001256 ORTHO05D001141 2.1e-09 67.4 32 90.6
Cc06_g11310 Coffea canephora HOM05D001256 ORTHO05D001141 4.6e-09 66.2 32 87.5
Dinv36758 Davidia involucrata HOM05D001256 ORTHO05D001141 4.6e-09 66.2 32 87.5
HanXRQChr12g0354801 Helianthus annuus HOM05D001256 ORTHO05D001141 4.6e-09 66.2 32 87.5
Lsat_1_v5_gn_5_145420 Lactuca sativa HOM05D001256 ORTHO05D001141 4.6e-09 66.2 32 87.5
Oeu006975.1 Olea europaea HOM05D001256 ORTHO05D001141 4.6e-09 66.2 32 87.5
PGR142G0957 Punica granatum HOM05D001256 ORTHO05D001141 4.6e-09 66.2 32 87.5
vmacro17224 Vaccinium macrocarpon HOM05D001256 ORTHO05D001141 4.6e-09 66.2 32 87.5
GSVIVG01015214001 Vitis vinifera HOM05D001256 ORTHO05D001141 4.6e-09 66.2 32 87.5
MELO3C006026.2 Cucumis melo HOM05D001256 ORTHO05D001141 6.0e-09 65.9 34 79.4
ATR0749G098 Amborella trichopoda HOM05D001256 ORTHO05D001141 7.8e-09 65.5 32 87.5
CiPaw.04G149800 Carya illinoinensis HOM05D001256 ORTHO05D001141 7.8e-09 65.5 32 87.5
Os05g0200100 Oryza sativa ssp. japonica HOM05D001256 ORTHO05D001141 7.8e-09 65.5 42 73.8
Sc08g0008430 Simmondsia chinensis HOM05D001256 ORTHO05D001141 7.8e-09 65.5 36 72.2
CSS0017780 Camellia sinensis var. sinensis HOM05D001256 ORTHO05D001141 1.0e-08 65.1 42 69.0
CSS0037195 Camellia sinensis var. sinensis HOM05D001256 ORTHO05D001141 1.0e-08 65.1 42 69.0
ECA234G3741 Erigeron canadensis HOM05D001256 ORTHO05D001141 1.0e-08 65.1 32 84.4
DCAR_011983 Daucus carota HOM05D001256 ORTHO05D001141 1.3e-08 64.7 32 84.4
Potri.006G150700 Populus trichocarpa HOM05D001256 ORTHO05D001141 1.3e-08 64.7 37 73.0
QL02p062845 Quercus lobata HOM05D001256 ORTHO05D001141 1.3e-08 64.7 32 84.4
TWI32G0423 Tripterygium wilfordii HOM05D001256 ORTHO05D001141 1.3e-08 64.7 32 84.4
TWI34G1552 Tripterygium wilfordii HOM05D001256 ORTHO05D001141 1.3e-08 64.7 32 84.4
BcaC09g51745 Brassica carinata HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
BcaC09g52210 Brassica carinata HOM05D002703 ORTHO05D002921 1.7e-08 64.3 32 84.4
BcaNung00482 Brassica carinata HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
A01p08460 Brassica napus HOM05D002703 ORTHO05D002921 1.7e-08 64.3 32 84.4
A03p59010 Brassica napus HOM05D002703 ORTHO05D002921 1.7e-08 64.3 32 84.4
C01p09840 Brassica napus HOM05D002703 ORTHO05D002921 1.7e-08 64.3 32 84.4
C07p57050 Brassica napus HOM05D002703 ORTHO05D002921 1.7e-08 64.3 32 84.4
BolC1t00946H Brassica oleracea HOM05D002703 ORTHO05D002921 1.7e-08 64.3 32 84.4
BolC7t46174H Brassica oleracea HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
BraA01t00793Z Brassica rapa HOM05D002703 ORTHO05D002921 1.7e-08 64.3 32 84.4
BraA03t14960Z Brassica rapa HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
CANSAT56G2609 Cannabis sativa HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
CANSAT56G3539 Cannabis sativa HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
CARHR237520 Cardamine hirsuta HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
ClCG05G000840 Citrullus lanatus HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
CsaV3_3G008080 Cucumis sativus L. HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Duzib133G0955 Durio zibethinus HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Thhalv10026102m.g Eutrema salsugineum HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Gohir.A08G057700 Gossypium hirsutum HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Gohir.D08G067000 Gossypium hirsutum HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Gorai.004G069600 Gossypium raimondii HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
MBI01_g09950_MAGBIO Magnolia biondii HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
MBI01_g37491_MAGBIO Magnolia biondii HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
MBI04_g36310_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 1.7e-08 64.3 32 84.4
Nn8g38891 Nelumbo nucifera HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
SalBow1G1449 Salvia bowleyana HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Sp7g27460 Schrenkiella parvula HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Sed0004082 Sechium edule HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Sed0027485 Sechium edule HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
THA.LOC104801885 Tarenaya hassleriana HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
Thecc.01G396500 Theobroma cacao HOM05D001256 ORTHO05D001141 1.7e-08 64.3 32 84.4
TAR383G0177 Trochodendron aralioides HOM05D001256 ORTHO05D001141 1.7e-08 64.3 79 41.8
AT4G26160 Arabidopsis thaliana HOM05D001256 ORTHO05D001141 3.0e-08 63.5 42 69.0
Carub.0007s1479 Capsella rubella HOM05D001256 ORTHO05D001141 3.0e-08 63.5 42 69.0
Cfa003096 Carpinus fangiana HOM05D001256 ORTHO05D001141 3.0e-08 63.5 32 81.2
CiPaw.03G217200 Carya illinoinensis HOM05D001256 ORTHO05D001141 3.0e-08 63.5 32 81.2
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 3.0e-08 63.5 32 81.2
Aa31LG2G20900 Aethionema arabicum HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 81.2
Aqoxy6G00451 Aquilegia oxysepala HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 81.2
AL7G22640 Arabidopsis lyrata HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 81.2
CSS0011851 Camellia sinensis var. sinensis HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 81.2
CSS0021617 Camellia sinensis var. sinensis HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 81.2
Carub.0007s1085 Capsella rubella HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 81.2
CAN.G52.15 Capsicum annuum HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 84.4
Nitab4.5_0005634g0030 Nicotiana tabacum HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 84.4
Nitab4.5_0014305g0030 Nicotiana tabacum HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 84.4
Solyc07g032786.1 Solanum lycopersicum HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 84.4
Sopen07g017970 Solanum pennellii HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 84.4
PGSC0003DMG400003449 Solanum tuberosum HOM05D001256 ORTHO05D001141 3.9e-08 63.2 32 84.4
arahy.Tifrunner.gnm1.ann1.K6DLXL Arachis hypogaea HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
arahy.Tifrunner.gnm1.ann1.P36XE8 Arachis hypogaea HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
CDE02G3611 Ceratophyllum demersum HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
Ca_25624_v3 Cicer arietinum L. HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
COL.COLO4_12391 Corchorus olitorius HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
Migut.L01486 Erythranthe guttata HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
Psat1g050360 Pisum sativum HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
TPR.G35501 Trifolium pratense HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
TAR624G0379 Trochodendron aralioides HOM05D001256 ORTHO05D001141 5.1e-08 62.8 32 81.2
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 6.6e-08 62.4 63 52.4
FAN28G2370 Fragaria x ananassa HOM05D001256 ORTHO05D001141 6.6e-08 62.4 32 78.1
Prupe.7G211300 Prunus persica HOM05D001256 ORTHO05D001141 6.6e-08 62.4 42 66.7
Sp7g24180 Schrenkiella parvula HOM05D001256 ORTHO05D001141 6.6e-08 62.4 42 66.7
CARHR233680 Cardamine hirsuta HOM05D001256 ORTHO05D001141 8.7e-08 62.0 42 66.7
Sabra06G0119400 Salix brachista HOM05D001256 ORTHO05D001141 8.7e-08 62.0 33 78.8
AT4G29670 Arabidopsis thaliana HOM05D001256 ORTHO05D001141 1.1e-07 61.6 32 78.1
Ciclev10009373m.g Citrus clementina HOM05D001256 ORTHO05D001141 1.1e-07 61.6 32 81.2
Gohir.A06G072000 Gossypium hirsutum HOM05D001256 ORTHO05D001141 1.1e-07 61.6 32 81.2
Gohir.D06G070500 Gossypium hirsutum HOM05D001256 ORTHO05D001141 1.1e-07 61.6 32 81.2
Gorai.010G082200 Gossypium raimondii HOM05D001256 ORTHO05D001141 1.1e-07 61.6 32 81.2
Lalb_Chr22g0349701 Lupinus albus HOM05D001256 ORTHO05D001141 1.1e-07 61.6 32 78.1
MD15G1205800 Malus domestica HOM05D001256 ORTHO05D001141 1.1e-07 61.6 33 72.7
Manes.03G032900 Manihot esculenta HOM05D001256 ORTHO05D001141 1.1e-07 61.6 32 81.2
Manes.16G102900 Manihot esculenta HOM05D001256 ORTHO05D001141 1.1e-07 61.6 32 81.2
Medtr6g092700 Medicago truncatula HOM05D001256 ORTHO05D001141 1.1e-07 61.6 61 50.8
Pp3c13_5320 Physcomitrium patens HOM05D001256 ORTHO05D001141 1.1e-07 61.6 33 72.7
Pp3c13_5350 Physcomitrium patens HOM05D001256 ORTHO05D001141 1.1e-07 61.6 33 72.7
AL7G26810 Arabidopsis lyrata HOM05D001256 ORTHO05D001141 1.5e-07 61.2 42 66.7
MSTRG.10569 Avicennia marina HOM05D001256 ORTHO05D001141 1.5e-07 61.2 32 84.4
Glyma.01G002700 Glycine max HOM05D001256 ORTHO05D001141 1.5e-07 61.2 74 47.3
MD02G1077400 Malus domestica HOM05D001256 ORTHO05D001141 1.5e-07 61.2 42 64.3
THA.LOC104811742 Tarenaya hassleriana HOM05D001256 ORTHO05D001141 1.5e-07 61.2 42 66.7
Zm00001eb284120 Zea mays HOM05D001256 ORTHO05D001141 1.5e-07 61.2 42 69.0
Zm00001eb347280 Zea mays HOM05D001256 ORTHO05D001141 1.5e-07 61.2 42 69.0
AUR62025891 Chenopodium quinoa HOM05D001256 ORTHO05D001141 1.9e-07 60.8 35 68.6
COL.COLO4_18211 Corchorus olitorius HOM05D001256 ORTHO05D001141 1.9e-07 60.8 32 81.2
FAN23G0282 Fragaria x ananassa HOM05D001256 ORTHO05D001141 1.9e-07 60.8 32 75.0
FAN26G1127 Fragaria x ananassa HOM05D001256 ORTHO05D001141 1.9e-07 60.8 32 75.0
FAN26G2513 Fragaria x ananassa HOM05D001256 ORTHO05D001141 1.9e-07 60.8 32 75.0
Gohir.D05G031000 Gossypium hirsutum HOM05D001256 ORTHO05D001141 1.9e-07 60.8 42 66.7
Gorai.009G031200 Gossypium raimondii HOM05D001256 ORTHO05D001141 1.9e-07 60.8 42 66.7
Phvul.004G176700 Phaseolus vulgaris HOM05D001256 ORTHO05D001141 1.9e-07 60.8 32 78.1
RcHm_v2.0_Chr2g0093171 Rosa chinensis HOM05D001256 ORTHO05D001141 1.9e-07 60.8 32 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1735 Anthoceros agrestis HOM05D001256 ORTHO05D001141 2.5e-07 60.5 33 69.7
PSO063G2697 Papaver somniferum HOM05D001256 ORTHO05D001141 2.5e-07 60.5 42 66.7
PSO832G0119 Papaver somniferum HOM05D001256 ORTHO05D001141 2.5e-07 60.5 42 66.7
EL10Ac5g11438 Beta vulgaris HOM05D001256 ORTHO05D001141 3.3e-07 60.1 32 75.0
CAN.G1389.7 Capsicum annuum HOM05D001256 ORTHO05D001141 3.3e-07 60.1 33 72.7
Cpa.g.sc1687.1 Carica papaya HOM05D001256 ORTHO05D001141 3.3e-07 60.1 61 47.5
AUR62029863 Chenopodium quinoa HOM05D001256 ORTHO05D001141 3.3e-07 60.1 32 75.0
Nitab4.5_0004364g0060 Nicotiana tabacum HOM05D001256 ORTHO05D001141 3.3e-07 60.1 33 72.7
Solyc03g121480.3 Solanum lycopersicum HOM05D001256 ORTHO05D001141 3.3e-07 60.1 33 72.7
Sopen03g040300 Solanum pennellii HOM05D001256 ORTHO05D001141 3.3e-07 60.1 33 72.7
PGSC0003DMG400002503 Solanum tuberosum HOM05D001256 ORTHO05D001141 3.3e-07 60.1 33 72.7
Eucgr.C03890 Eucalyptus grandis HOM05D001256 ORTHO05D001141 4.3e-07 59.7 32 78.1
Oeu011899.1 Olea europaea HOM05D001256 ORTHO05D001141 4.3e-07 59.7 33 69.7
Thecc.09G090600 Theobroma cacao HOM05D001256 ORTHO05D001141 4.3e-07 59.7 32 78.1
MSTRG.26406 Avicennia marina HOM05D001256 ORTHO05D001141 5.6e-07 59.3 33 75.8
BcaC09g50674 Brassica carinata HOM05D001256 ORTHO05D001141 5.6e-07 59.3 42 61.9
BcaNung02446 Brassica carinata HOM05D001256 ORTHO05D001141 5.6e-07 59.3 42 61.9
A01p17440 Brassica napus HOM05D001256 ORTHO05D001141 5.6e-07 59.3 42 61.9
C01p21960 Brassica napus HOM05D001256 ORTHO05D001141 5.6e-07 59.3 42 61.9
BolC1t02125H Brassica oleracea HOM05D001256 ORTHO05D001141 5.6e-07 59.3 42 61.9
BraA01t01699Z Brassica rapa HOM05D001256 ORTHO05D001141 5.6e-07 59.3 42 61.9
FvH4_1g07270 Fragaria vesca HOM05D001256 ORTHO05D001141 5.6e-07 59.3 32 71.9
FAN19G2131 Fragaria x ananassa HOM05D001256 ORTHO05D001141 5.6e-07 59.3 32 71.9
Hund02388 Selenicereus undatus HOM05D001256 ORTHO05D001141 5.6e-07 59.3 42 61.9
Glyma.07G129600 Glycine max HOM05D001256 ORTHO05D001141 7.3e-07 58.9 74 45.9
Lj2g0018263 Lotus japonicus HOM05D001256 ORTHO05D001141 7.3e-07 58.9 32 75.0
Potri.018G066500 Populus trichocarpa HOM05D001256 ORTHO05D001141 7.3e-07 58.9 32 75.0
SEGI_18430 Sequoiadendron giganteum HOM05D001256 ORTHO05D001141 7.3e-07 58.9 42 61.9
Migut.I01017 Erythranthe guttata HOM05D001256 ORTHO05D001141 9.6e-07 58.5 33 66.7
Nitab4.5_0005281g0030 Nicotiana tabacum HOM05D001256 ORTHO05D001141 9.6e-07 58.5 33 69.7
Peaxi162Scf00038g01431 Petunia axillaris HOM05D001256 ORTHO05D001141 9.6e-07 58.5 33 69.7
CARHR035500 Cardamine hirsuta HOM05D001256 ORTHO05D001141 1.3e-06 58.2 35 71.4
SMO164G0140 Selaginella moellendorffii HOM05D001256 ORTHO05D001141 1.3e-06 58.2 33 66.7
unitig_748.g7456 Utricularia gibba HOM05D001256 ORTHO05D001141 1.3e-06 58.2 32 71.9
THA.LOC104803974 Tarenaya hassleriana HOM05D001256 ORTHO05D001141 1.6e-06 57.8 32 78.1
Cc04_g02050 Coffea canephora HOM05D001256 ORTHO05D001141 2.1e-06 57.4 33 69.7
SalBow6G1746 Salvia bowleyana HOM05D001256 ORTHO05D001141 2.1e-06 57.4 33 63.6
GSVIVG01016875001 Vitis vinifera HOM05D001256 ORTHO05D001141 6.2e-06 55.8 32 71.9
Nitab4.5_0000255g0140 Nicotiana tabacum HOM05D001256 ORTHO05D001141 8.1e-06 55.5 32 68.8


User provided reference genes

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