Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 3.6e-114 414.8 198 100.0
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 1.3e-108 396.4 198 97.0
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 1.0e-76 290.4 203 70.4
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 2.1e-69 266.2 196 65.8
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 3.9e-68 261.9 198 66.7
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 5.1e-68 261.5 198 66.7
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 8.7e-68 260.8 209 63.2
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.9e-67 259.6 216 61.1
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.9e-67 259.6 216 61.1
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.9e-67 259.6 205 66.8
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 3.3e-67 258.8 212 62.3
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 7.4e-67 257.7 204 63.2
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.3e-66 256.9 212 61.3
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.3e-66 256.9 210 64.3
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.6e-66 256.5 210 62.9
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.6e-66 256.5 204 63.2
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 2.1e-66 256.1 215 60.9
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 2.8e-66 255.8 211 61.6
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 2.8e-66 255.8 210 63.8
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 3.7e-66 255.4 233 56.7
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 4.8e-66 255.0 210 60.5
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 4.8e-66 255.0 215 60.5
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 6.2e-66 254.6 206 62.6
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 8.1e-66 254.2 233 57.1
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 1.1e-65 253.8 217 58.5
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.1e-65 253.8 211 62.1
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 1.8e-65 253.1 198 63.6
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 1.8e-65 253.1 213 62.4
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 2.4e-65 252.7 211 62.1
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.4e-65 252.7 211 59.7
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 3.1e-65 252.3 210 60.5
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 9.0e-65 250.8 215 58.6
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.5e-64 250.0 216 61.1
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 2.0e-64 249.6 214 60.7
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 2.0e-64 249.6 212 59.9
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 2.0e-64 249.6 216 60.2
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 3.4e-64 248.8 207 60.9
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 4.5e-64 248.4 208 63.5
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 4.5e-64 248.4 204 60.3
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 5.8e-64 248.1 214 57.5
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 1.0e-63 247.3 223 57.4
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 1.0e-63 247.3 213 60.6
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.3e-63 246.9 196 63.8
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.3e-63 246.9 213 60.6
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 1.7e-63 246.5 210 58.6
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 2.9e-63 245.7 204 62.3
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 2.9e-63 245.7 196 63.8
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 4.9e-63 245.0 193 62.7
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 4.9e-63 245.0 193 63.7
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 6.5e-63 244.6 187 65.8
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 8.4e-63 244.2 214 57.5
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 8.4e-63 244.2 210 60.5
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 8.4e-63 244.2 210 60.5
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 1.1e-62 243.8 193 62.7
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 1.1e-62 243.8 193 62.7
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 1.1e-62 243.8 198 62.1
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 1.1e-62 243.8 212 60.8
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 1.9e-62 243.0 210 59.5
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 2.5e-62 242.7 201 60.7
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 4.2e-62 241.9 195 64.1
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 4.2e-62 241.9 209 59.8
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 5.5e-62 241.5 212 59.0
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 7.1e-62 241.1 214 57.9
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 1.2e-61 240.4 190 62.6
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.2e-61 240.4 210 58.6
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 1.6e-61 240.0 210 58.1
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 2.1e-61 239.6 211 59.7
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 2.7e-61 239.2 190 62.1
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 2.7e-61 239.2 193 64.2
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 3.5e-61 238.8 215 57.2
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 4.6e-61 238.4 227 55.9
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 7.9e-61 237.7 197 62.9
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 7.9e-61 237.7 216 58.8
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 1.0e-60 237.3 204 59.3
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.8e-60 236.5 190 63.2
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 3.0e-60 235.7 193 62.7
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 3.0e-60 235.7 193 62.7
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 5.1e-60 235.0 210 56.7
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 6.7e-60 234.6 201 61.7
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 8.7e-60 234.2 202 58.4
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 7.4e-59 231.1 212 55.7
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 9.6e-59 230.7 211 55.9
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 9.6e-59 230.7 197 59.4
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 1.3e-58 230.3 222 53.6
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 2.1e-58 229.6 213 56.8
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.7e-58 228.8 194 59.8
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 6.3e-58 228.0 201 60.2
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 8.2e-58 227.6 201 59.7
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 2.4e-57 226.1 200 58.0
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 4.5e-56 221.9 217 53.5
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 5.9e-56 221.5 185 61.6
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 1.3e-55 220.3 121 86.8
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.1e-54 217.2 202 57.4
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 1.4e-54 216.9 207 54.6
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 3.2e-54 215.7 163 66.3
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 3.2e-54 215.7 219 55.3
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 2.3e-52 209.5 151 68.9
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 2.0e-48 196.4 191 53.9
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 2.6e-48 196.1 117 76.9
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 1.6e-45 186.8 152 59.9
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 3.9e-44 182.2 197 50.8
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.5e-43 179.5 205 47.8
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 3.3e-43 179.1 156 59.0
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 4.1e-41 172.2 235 43.8
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 2.0e-40 169.9 117 67.5
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 1.1e-38 164.1 164 54.3
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 7.2e-38 161.4 113 71.7
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 3.0e-36 156.0 132 56.8
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 5.1e-36 155.2 140 54.3
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 8.8e-36 154.5 162 52.5
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 3.1e-33 146.0 149 52.3
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 6.1e-29 131.7 113 54.9
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 6.8e-20 101.7 119 46.2
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 3.4e-19 99.4 114 49.1
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 5.7e-19 98.6 74 63.5
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.3e-18 97.4 119 46.2
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 7.7e-16 88.2 146 39.7
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 2.5e-14 83.2 58 72.4
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 7.2e-14 81.6 50 74.0
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 6.3e-10 68.6 114 37.7
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 3.5e-08 62.8 86 44.2
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 5.9e-08 62.0 77 37.7
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 7.7e-08 61.6 68 48.5
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 1.9e-06 57.0 83 31.3


User provided reference genes

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