Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 1.8e-237 825.5 412 100.0
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.0e-179 633.6 396 78.0
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 6.9e-176 620.9 413 76.8
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 3.2e-173 612.1 412 74.5
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.6e-170 600.5 438 70.5
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.6e-170 600.5 438 70.5
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.1e-157 560.5 409 68.5
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.9e-155 552.0 367 72.5
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.3e-153 547.0 447 63.3
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 4.8e-153 545.0 413 66.1
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 6.9e-152 541.2 392 66.8
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 6.9e-152 541.2 415 63.9
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 2.0e-151 539.7 399 66.7
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 3.4e-151 538.9 414 65.2
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 7.7e-151 537.7 414 65.0
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.7e-150 536.6 359 70.5
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.7e-150 536.6 400 66.0
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 2.2e-150 536.2 370 70.3
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.9e-150 535.8 417 64.3
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.9e-150 535.8 359 70.2
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 3.8e-150 535.4 398 66.8
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 8.5e-150 534.3 429 63.4
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 1.4e-149 533.5 398 67.1
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.5e-149 532.7 402 65.9
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 7.2e-149 531.2 398 65.8
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 7.2e-149 531.2 414 64.5
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 7.2e-149 531.2 431 63.3
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-148 530.4 407 63.6
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 3.6e-148 528.9 398 65.6
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 6.1e-148 528.1 412 65.5
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 3.0e-147 525.8 401 64.3
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 6.7e-147 524.6 340 73.8
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.1e-146 523.9 409 65.0
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 4.4e-146 521.9 413 64.2
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 5.7e-146 521.5 410 64.1
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.3e-145 518.1 428 61.7
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.3e-145 518.1 364 67.6
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 8.2e-145 517.7 395 63.8
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 1.1e-144 517.3 395 63.5
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 1.4e-144 516.9 382 66.2
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.8e-144 516.5 396 64.9
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 4.1e-144 515.4 341 71.3
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 5.3e-144 515.0 400 64.0
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 7.0e-144 514.6 407 62.9
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 9.1e-144 514.2 394 64.7
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.5e-143 513.5 356 68.0
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 2.6e-143 512.7 408 60.5
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.6e-143 512.7 400 63.8
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 5.9e-143 511.5 392 63.0
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 1.3e-142 510.4 414 62.3
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 2.2e-142 509.6 414 62.1
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 8.5e-142 507.7 413 62.2
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.5e-141 506.1 416 61.1
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 3.2e-141 505.8 399 64.9
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.2e-141 505.4 388 62.6
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 4.2e-141 505.4 452 58.4
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 5.5e-141 505.0 420 59.3
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 2.7e-140 502.7 407 62.4
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 6.1e-140 501.5 392 64.0
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.0e-139 500.7 374 63.9
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 3.0e-139 499.2 408 60.8
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 4.0e-139 498.8 391 61.1
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.7e-139 498.0 408 61.3
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 6.7e-139 498.0 423 61.2
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.5e-138 496.9 416 59.6
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 2.0e-138 496.5 411 59.6
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 3.7e-137 492.3 417 59.5
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 3.7e-137 492.3 356 65.2
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 4.8e-137 491.9 373 64.3
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 1.1e-136 490.7 322 72.0
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 1.1e-136 490.7 360 65.6
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.1e-136 490.7 359 64.3
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 2.4e-136 489.6 414 60.9
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 7.0e-136 488.0 416 58.9
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 7.0e-136 488.0 411 59.6
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 1.2e-135 487.3 393 61.8
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 1.6e-135 486.9 395 62.3
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 5.9e-135 485.0 341 66.9
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 5.9e-135 485.0 392 63.0
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.0e-134 484.2 409 58.9
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.3e-134 483.8 418 59.8
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 2.5e-133 479.6 371 63.3
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 9.4e-133 477.6 420 58.8
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 9.4e-133 477.6 371 63.1
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.2e-132 477.2 346 65.9
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 1.2e-132 477.2 415 58.3
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.2e-132 477.2 360 62.2
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 2.1e-132 476.5 363 60.9
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 3.7e-129 465.7 391 58.1
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 4.8e-129 465.3 415 57.1
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-128 464.2 378 58.5
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 9.1e-128 461.1 378 58.2
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 1.6e-127 460.3 378 58.2
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 2.0e-127 459.9 378 57.7
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 5.9e-127 458.4 378 57.9
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 5.9e-127 458.4 412 55.3
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 1.0e-126 457.6 409 55.7
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 1.5e-125 453.8 410 55.9
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.9e-125 453.4 411 56.4
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.5e-125 453.0 379 58.0
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 7.2e-125 451.4 405 55.1
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.2e-124 450.7 378 57.7
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.6e-124 450.3 378 57.7
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.6e-124 450.3 378 57.7
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 2.1e-124 449.9 366 62.6
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 2.7e-124 449.5 411 56.0
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 8.8e-123 444.5 358 60.3
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 3.4e-122 442.6 412 54.1
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 5.7e-122 441.8 378 56.1
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 1.6e-116 423.7 413 52.5
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 2.8e-116 422.9 338 62.7
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 2.8e-116 422.9 359 58.2
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 4.7e-116 422.2 462 51.1
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.8e-115 420.2 418 55.5
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.0e-115 419.5 398 54.5
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 2.0e-114 416.8 362 55.8
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 6.6e-110 401.7 406 50.5
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 3.3e-109 399.4 293 65.9
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 7.3e-109 398.3 412 54.1
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 2.1e-108 396.7 417 49.2
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.0e-107 394.4 286 65.4
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.5e-106 390.6 345 57.1
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.3e-105 384.8 423 50.4
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 5.0e-102 375.6 292 60.6
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 2.8e-100 369.8 323 55.1
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.4e-99 367.5 293 60.4
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 1.1e-93 347.8 293 59.7
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.1e-88 331.3 396 45.5
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 3.5e-87 326.2 409 45.5
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 4.3e-85 319.3 296 54.1
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 4.3e-85 319.3 428 42.8
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.8e-84 316.6 300 53.0
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.2e-83 312.4 409 48.4
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 1.2e-74 284.6 177 71.8
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 6.6e-70 268.9 350 44.3
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.1e-61 241.5 177 72.9
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.1e-59 235.0 303 42.9
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.2e-57 227.3 405 38.3
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.1e-56 222.2 230 51.3
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-55 221.5 362 38.7
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-55 221.5 362 38.7
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.5e-50 204.5 123 74.0
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.1e-45 188.3 409 33.0
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 2.9e-41 173.7 372 33.3
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.6e-39 166.8 231 41.6
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.4e-35 154.1 121 57.9
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 6.7e-30 136.0 381 26.2
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 5.0e-25 119.8 371 26.7
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.0e-23 112.5 106 53.8
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 9.7e-21 105.5 122 46.7
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 4.1e-19 100.1 67 70.1
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.0e-17 95.5 182 33.5
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.1e-16 92.0 53 77.4
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 9.4e-16 89.0 83 55.4
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 9.4e-16 89.0 83 55.4
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 7.0e-11 72.8 75 49.3
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 5.2e-06 56.6 37 73.0
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 6.8e-06 56.2 45 57.8
Glyma.02G139950 Glycine max HOM05D002163 ORTHO05D002386 6.8e-06 56.2 29 86.2


User provided reference genes

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