Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold211G42168 Striga asiatica HOM05D007157 ORTHO05D009045 6.1e-216 754.6 633 100.0
MSTRG.23478 Avicennia marina HOM05D007157 ORTHO05D009045 3.4e-134 483.0 620 64.8
Migut.H00838 Erythranthe guttata HOM05D007157 ORTHO05D009045 9.4e-132 474.9 388 64.9
Oeu048928.2 Olea europaea HOM05D007157 ORTHO05D009045 4.2e-116 422.9 388 56.2
SalBow3G1100 Salvia bowleyana HOM05D007157 ORTHO05D009045 9.4e-116 421.8 379 69.4
SalBow3G1401 Salvia bowleyana HOM05D007157 ORTHO05D009045 2.3e-114 417.2 379 68.9
Prupe.3G308900 Prunus persica HOM05D007157 ORTHO05D009045 2.0e-110 404.1 388 55.7
CSS0034431 Camellia sinensis var. sinensis HOM05D007157 ORTHO05D009045 1.9e-108 397.5 382 55.2
MD09G1008000 Malus domestica HOM05D007157 ORTHO05D009045 2.5e-108 397.1 388 55.4
Actinidia36218 Actinidia chinensis HOM05D007157 ORTHO05D009045 5.5e-108 396.0 382 55.2
Dinv25644 Davidia involucrata HOM05D007157 ORTHO05D009045 1.2e-107 394.8 386 56.0
Lj5A824G14 Lonicera japonica HOM05D007157 ORTHO05D009045 1.6e-107 394.4 386 54.7
FAN05G0711 Fragaria x ananassa HOM05D007157 ORTHO05D009045 2.1e-107 394.0 388 55.4
RcHm_v2.0_Chr2g0175991 Rosa chinensis HOM05D007157 ORTHO05D009045 2.1e-107 394.0 385 55.1
Haze_14901 Corylus avellana HOM05D007157 ORTHO05D009045 4.7e-107 392.9 386 55.2
CiPaw.03G058300 Carya illinoinensis HOM05D007157 ORTHO05D009045 8.0e-107 392.1 383 55.9
FvH4_6g53850 Fragaria vesca HOM05D007157 ORTHO05D009045 8.0e-107 392.1 388 55.2
FAN14G2967 Fragaria x ananassa HOM05D007157 ORTHO05D009045 8.0e-107 392.1 388 55.2
CAN.G473.124 Capsicum annuum HOM05D007157 ORTHO05D009045 1.0e-106 391.7 388 53.1
PGSC0003DMG400020245 Solanum tuberosum HOM05D007157 ORTHO05D009045 2.3e-106 390.6 388 52.3
Rhsim10G0004500 Rhododendron simsii HOM05D007157 ORTHO05D009045 5.2e-106 389.4 387 54.0
HanXRQChr17g0551661 Helianthus annuus HOM05D007157 ORTHO05D009045 6.8e-106 389.0 385 53.8
Nitab4.5_0005858g0130 Nicotiana tabacum HOM05D000485 ORTHO05D009045 6.8e-106 389.0 381 53.3
Cfa007204 Carpinus fangiana HOM05D007157 ORTHO05D009045 2.0e-105 387.5 386 54.4
Eucgr.H03351 Eucalyptus grandis HOM05D007157 ORTHO05D009045 2.0e-105 387.5 387 53.2
Nitab4.5_0000519g0020 Nicotiana tabacum HOM05D007157 ORTHO05D009045 5.7e-105 386.0 381 53.5
Atru.chr6.2599 Acer truncatum HOM05D007157 ORTHO05D009045 7.5e-105 385.6 384 52.9
CANSAT64G2603 Cannabis sativa HOM05D007157 ORTHO05D009045 9.8e-105 385.2 383 54.0
Cpa.g.c35912 Carica papaya HOM05D007157 ORTHO05D009045 1.1e-103 381.7 383 51.4
Sopen02g038950 Solanum pennellii HOM05D007157 ORTHO05D009045 1.4e-103 381.3 388 51.5
Solyc02g094310.3 Solanum lycopersicum HOM05D007157 ORTHO05D009045 2.4e-103 380.6 388 51.5
Peaxi162Scf00420g00637 Petunia axillaris HOM05D007157 ORTHO05D009045 9.2e-103 378.6 620 52.4
QL02p070811 Quercus lobata HOM05D007157 ORTHO05D009045 3.5e-102 376.7 383 65.0
COL.COLO4_13293 Corchorus olitorius HOM05D000485 ORTHO05D009045 7.7e-102 375.6 384 51.3
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 7.7e-102 375.6 386 52.8
FAN02G1074 Fragaria x ananassa HOM05D007157 ORTHO05D009045 1.1e-100 371.7 388 52.8
Manes.04G088300 Manihot esculenta HOM05D007157 ORTHO05D009045 1.1e-100 371.7 384 51.6
Duzib147G0388 Durio zibethinus HOM05D007157 ORTHO05D009045 1.5e-100 371.3 384 51.0
GSVIVG01033052001 Vitis vinifera HOM05D007157 ORTHO05D009045 2.5e-100 370.5 383 52.7
Lsat_1_v5_gn_0_3360 Lactuca sativa HOM05D007157 ORTHO05D009045 1.2e-99 368.2 382 50.8
Aqoxy5G03262 Aquilegia oxysepala HOM05D007157 ORTHO05D009045 1.0e-98 365.2 390 51.5
DCAR_021804 Daucus carota HOM05D007157 ORTHO05D009045 1.0e-98 365.2 386 50.8
Thecc.04G040600 Theobroma cacao HOM05D007157 ORTHO05D009045 1.4e-98 364.8 385 50.4
AUR62029427 Chenopodium quinoa HOM05D007157 ORTHO05D009045 3.7e-96 356.7 386 51.0
AUR62003414 Chenopodium quinoa HOM05D000173 ORTHO05D006747 1.4e-95 354.8 386 50.8
EL10Ac6g15443 Beta vulgaris HOM05D007157 ORTHO05D009045 5.4e-95 352.8 388 50.3
Gorai.012G084300 Gossypium raimondii HOM05D007157 ORTHO05D009045 9.2e-95 352.1 381 48.8
PSO017G3067 Papaver somniferum HOM05D007157 ORTHO05D009045 1.2e-94 351.7 388 50.0
TWI34G0589 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 1.2e-94 351.7 384 50.3
TWI34G1752 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 1.2e-94 351.7 384 50.3
Ciclev10014547m.g Citrus clementina HOM05D007157 ORTHO05D009045 1.6e-94 351.3 388 47.9
Gohir.D04G075000 Gossypium hirsutum HOM05D007157 ORTHO05D009045 3.5e-94 350.1 381 48.8
Sc03g0006270 Simmondsia chinensis HOM05D007157 ORTHO05D009045 3.0e-93 347.1 379 51.2
CsaV3_2G034000 Cucumis sativus L. HOM05D007157 ORTHO05D009045 2.5e-92 344.0 381 47.0
Glyma.16G053700 Glycine max HOM05D007157 ORTHO05D009045 3.3e-92 343.6 376 48.4
Gohir.A05G336500 Gossypium hirsutum HOM05D007157 ORTHO05D009045 5.6e-92 342.8 381 48.0
Sabra16G0209300 Salix brachista HOM05D007157 ORTHO05D009045 7.3e-92 342.4 381 60.9
VMungo1383G0567 Vigna mungo HOM05D007157 ORTHO05D009045 7.3e-92 342.4 383 46.5
Lalb_Chr00c01g0403821 Lupinus albus HOM05D007157 ORTHO05D009045 1.6e-91 341.3 383 47.3
Sed0017582 Sechium edule HOM05D007157 ORTHO05D009045 1.6e-91 341.3 381 48.6
MELO3C008172.2 Cucumis melo HOM05D007157 ORTHO05D009045 6.2e-91 339.3 381 46.7
ClCG11G009400 Citrullus lanatus HOM05D007157 ORTHO05D009045 8.0e-91 339.0 381 47.0
C09p63050 Brassica napus HOM05D007157 ORTHO05D009045 6.8e-90 335.9 384 47.7
BolC9t59142H Brassica oleracea HOM05D007157 ORTHO05D009045 1.5e-89 334.7 384 47.9
A10p24350 Brassica napus HOM05D007157 ORTHO05D009045 5.8e-89 332.8 384 47.4
Lj5A791T21 Lonicera japonica HOM05D007157 ORTHO05D009045 1.3e-88 331.6 386 49.5
BraA10t44501Z Brassica rapa HOM05D007157 ORTHO05D009045 2.9e-88 330.5 384 47.1
Carub.0006s1227 Capsella rubella HOM05D007157 ORTHO05D009045 2.9e-88 330.5 384 46.6
Phvul.001G089400 Phaseolus vulgaris HOM05D007157 ORTHO05D009045 1.9e-87 327.8 383 46.0
CARHR199280 Cardamine hirsuta HOM05D007157 ORTHO05D009045 2.4e-87 327.4 383 45.7
Ah.03g148180 Amaranthus hybridus HOM05D007157 ORTHO05D009045 7.0e-87 325.9 369 49.6
AL6G24740 Arabidopsis lyrata HOM05D007157 ORTHO05D009045 2.0e-86 324.3 383 46.0
Thhalv10012953m.g Eutrema salsugineum HOM05D007157 ORTHO05D009045 4.6e-86 323.2 384 46.1
Sp6g29920 Schrenkiella parvula HOM05D007157 ORTHO05D009045 1.0e-85 322.0 384 45.6
THA.LOC104802372 Tarenaya hassleriana HOM05D007157 ORTHO05D009045 1.3e-85 321.6 388 45.6
AT5G14080 Arabidopsis thaliana HOM05D007157 ORTHO05D009045 1.1e-84 318.5 383 45.7
Aa31LG11G14870 Aethionema arabicum HOM05D007157 ORTHO05D009045 2.1e-83 314.3 386 44.6
vmacro05975 Vaccinium macrocarpon HOM05D007157 ORTHO05D009045 6.2e-83 312.8 356 50.3
arahy.Tifrunner.gnm1.ann1.VP4GDR Arachis hypogaea HOM05D007157 ORTHO05D009045 2.3e-82 310.8 386 46.4
arahy.Tifrunner.gnm1.ann1.LR7EIQ Arachis hypogaea HOM05D007157 ORTHO05D009045 2.6e-81 307.4 386 46.4
Potri.001G326800 Populus trichocarpa HOM05D007157 ORTHO05D009045 5.4e-79 299.7 381 50.9
Lj1g0010660 Lotus japonicus HOM05D007157 ORTHO05D009045 1.2e-78 298.5 401 44.6
ATR0012G053 Amborella trichopoda HOM05D007157 ORTHO05D009045 4.3e-76 290.0 376 43.4
Medtr7g027940 Medicago truncatula HOM05D007157 ORTHO05D009045 8.9e-74 282.3 390 42.6
TPR.G8553 Trifolium pratense HOM05D007157 ORTHO05D009045 3.4e-73 280.4 396 41.9
CDE01G0454 Ceratophyllum demersum HOM05D007157 ORTHO05D009045 4.9e-72 276.6 373 41.8
PGR083G0651 Punica granatum HOM05D007157 ORTHO05D009045 1.2e-70 271.9 391 47.3
SHI04033 Sapria himalayana HOM05D007157 ORTHO05D009045 2.3e-69 267.7 383 42.6
TPR.G29476 Trifolium pratense HOM05D007157 ORTHO05D009045 3.0e-69 267.3 366 42.9
Nn5g29238 Nelumbo nucifera HOM05D007157 ORTHO05D009045 1.5e-68 265.0 322 46.0
ECA246G1262 Erigeron canadensis HOM05D000482 ORTHO05D000349 1.4e-66 258.5 285 48.1
FAN09G1907 Fragaria x ananassa HOM05D007157 ORTHO05D009045 3.1e-66 257.3 282 51.1
Hma1.2p1_0812F.1_g222250 Hydrangea macrophylla HOM05D007157 ORTHO05D009045 2.7e-62 244.2 206 60.2
Glyma.19G095500 Glycine max HOM05D007157 ORTHO05D009045 3.2e-55 220.7 325 40.3
Zm00001eb093300 Zea mays HOM05D007157 ORTHO05D009045 4.2e-47 193.7 225 49.8
Hund04273 Selenicereus undatus HOM05D007157 ORTHO05D009045 9.3e-47 192.6 247 44.9
Psat3g167400 Pisum sativum HOM05D007157 ORTHO05D009045 3.9e-45 187.2 203 50.7
HPP92_009778 Vanilla planifolia HOM05D007157 ORTHO05D009045 2.5e-39 167.9 224 41.1
BcaC02g07725 Brassica carinata HOM05D007157 ORTHO05D009045 2.7e-38 164.5 224 44.2
Ca_12649_v3 Cicer arietinum L. HOM05D007157 ORTHO05D009045 8.7e-37 159.5 201 47.3
TAR375G1084 Trochodendron aralioides HOM05D007157 ORTHO05D009045 1.1e-36 159.1 119 64.7
Actinidia05886 Actinidia chinensis HOM05D007157 ORTHO05D009045 1.9e-36 158.3 355 35.2
Lj8P534T4 Lonicera japonica HOM05D007157 ORTHO05D009045 4.8e-35 153.7 130 59.2
TAR375G0551 Trochodendron aralioides HOM05D007157 ORTHO05D009045 3.2e-31 141.0 126 57.1
BolC4t27904H Brassica oleracea HOM05D007157 ORTHO05D009045 3.6e-30 137.5 224 39.7
Cc00_g20250 Coffea canephora HOM05D007157 ORTHO05D009045 3.6e-30 137.5 112 61.6
FAN09G1568 Fragaria x ananassa HOM05D007157 ORTHO05D009045 1.9e-28 131.7 101 65.3
TPR.G29386 Trifolium pratense HOM05D007157 ORTHO05D009045 7.4e-12 76.6 82 47.6
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 2.5e-07 61.6 78 38.5
CAN.G999.30 Capsicum annuum HOM05D004079 ORTHO05D005437 4.2e-07 60.8 81 37.0
Aa31LG4G4980 Aethionema arabicum HOM05D004079 ORTHO05D005437 5.5e-07 60.5 79 36.7
QL10p014896 Quercus lobata HOM05D004079 ORTHO05D005437 5.5e-07 60.5 93 34.4
PSO591G0491 Papaver somniferum HOM05D004079 ORTHO05D005437 9.4e-07 59.7 78 37.2
PSO782G0394 Papaver somniferum HOM05D004079 ORTHO05D005437 1.2e-06 59.3 79 38.0
Peaxi162Scf00009g00051 Petunia axillaris HOM05D004079 ORTHO05D005437 1.2e-06 59.3 81 35.8
CiPaw.11G036400 Carya illinoinensis HOM05D004079 ORTHO05D005437 2.7e-06 58.2 80 37.5
BcaB02g06965 Brassica carinata HOM05D004079 ORTHO05D005437 3.6e-06 57.8 81 33.3
FvH4_5g15730 Fragaria vesca HOM05D004079 ORTHO05D005437 3.6e-06 57.8 80 36.2
FAN18G0859 Fragaria x ananassa HOM05D004079 ORTHO05D005437 3.6e-06 57.8 80 36.2
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 3.6e-06 57.8 80 37.5
FAN04G1937 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.7e-06 57.4 80 36.2
FAN08G0428 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.7e-06 57.4 80 36.2
FAN13G1290 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.7e-06 57.4 80 36.2
Os12g0638900 Oryza sativa ssp. japonica HOM05D004079 ORTHO05D005437 4.7e-06 57.4 79 39.2
Thhalv10009547m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 6.1e-06 57.0 78 35.9
A07p29240 Brassica napus HOM05D004079 ORTHO05D005437 8.0e-06 56.6 81 33.3
C06p33140 Brassica napus HOM05D004079 ORTHO05D005437 8.0e-06 56.6 81 33.3
BolC6t38429H Brassica oleracea HOM05D004079 ORTHO05D005437 8.0e-06 56.6 81 33.3
BraA07t30563Z Brassica rapa HOM05D004079 ORTHO05D005437 8.0e-06 56.6 81 33.3
Cpa.g.sc129.66 Carica papaya HOM05D000424 ORTHO05D000355 8.0e-06 56.6 226 24.8
Solyc03g113380.4 Solanum lycopersicum HOM05D004079 ORTHO05D005437 8.0e-06 56.6 81 35.8
Sopen03g032430 Solanum pennellii HOM05D004079 ORTHO05D005437 8.0e-06 56.6 81 35.8
PGSC0003DMG400013180 Solanum tuberosum HOM05D004079 ORTHO05D005437 8.0e-06 56.6 81 35.8


User provided reference genes

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