Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 0.0e+00 1308.1 670 100.0
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 4.9e-296 1020.8 667 79.3
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 3.7e-272 941.4 671 71.8
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 3.1e-250 868.6 668 68.1
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 2.5e-223 779.2 666 60.4
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 9.1e-218 760.8 666 60.2
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.2e-201 707.2 673 54.7
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.6e-201 706.8 673 54.5
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.4e-197 693.7 668 56.3
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 2.3e-197 693.0 689 54.0
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.2e-195 686.4 674 54.2
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.1e-194 684.1 678 52.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 3.1e-194 682.6 677 53.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.9e-192 676.0 694 52.7
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 6.1e-190 668.3 694 52.2
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.9e-187 658.7 675 51.6
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.2e-185 654.1 689 51.2
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 3.5e-185 652.5 678 51.0
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 5.0e-184 648.7 675 50.8
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 9.5e-183 644.4 681 50.8
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.6e-182 642.5 672 50.7
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.0e-181 641.0 672 51.5
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.8e-181 640.2 669 51.3
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.8e-181 640.2 684 52.2
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 6.8e-181 638.3 677 50.7
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 2.6e-180 636.3 667 50.8
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 3.4e-180 636.0 670 50.1
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 4.4e-180 635.6 670 51.5
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.4e-178 629.8 679 51.3
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.6e-177 627.1 671 49.0
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.5e-177 625.9 676 50.7
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 4.6e-177 625.5 691 50.1
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.0e-176 624.4 679 49.5
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 3.9e-176 622.5 682 50.7
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 1.5e-175 620.5 680 49.9
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.9e-175 620.2 691 49.9
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.5e-175 619.8 673 50.4
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 5.6e-175 618.6 691 50.1
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 9.5e-175 617.8 678 49.6
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.6e-174 617.1 703 48.6
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.8e-174 616.3 670 49.6
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 4.7e-174 615.5 672 50.3
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.0e-173 614.4 663 50.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.0e-173 614.4 672 48.4
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.0e-173 614.4 602 54.3
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.4e-173 614.0 674 49.0
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 4.0e-173 612.5 675 48.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.4e-172 609.4 670 49.1
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 5.8e-172 608.6 663 50.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.1e-170 604.4 673 49.9
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 4.1e-170 602.4 672 50.3
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 7.8e-169 598.2 668 49.1
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.7e-168 597.0 688 47.7
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.3e-168 596.7 692 48.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.5e-167 594.0 672 48.4
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.5e-167 594.0 672 48.4
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.5e-167 594.0 669 47.8
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.5e-167 594.0 673 49.2
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.5e-167 593.2 673 49.3
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.5e-167 593.2 667 48.0
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 5.6e-167 592.0 679 47.6
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.1e-166 590.1 674 46.9
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 8.1e-166 588.2 667 48.4
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.1e-166 588.2 670 49.1
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.8e-165 587.0 672 47.8
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-165 586.6 673 49.0
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 2.3e-165 586.6 669 47.1
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 5.2e-165 585.5 669 47.8
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.4e-164 582.8 669 47.4
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.5e-164 581.6 670 48.8
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-163 580.9 670 49.0
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.2e-163 580.1 639 50.1
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 4.1e-162 575.9 667 48.0
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 5.4e-162 575.5 679 47.0
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.5e-161 572.8 671 45.6
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.3e-160 570.1 677 47.7
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 3.6e-158 562.8 671 45.9
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.1e-157 561.2 668 46.7
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.4e-157 560.8 670 46.1
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.8e-157 560.5 678 45.4
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 9.2e-154 548.1 687 45.7
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 7.8e-153 545.0 687 44.0
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.3e-152 543.5 704 44.7
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 5.1e-152 542.3 695 45.2
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 9.6e-151 538.1 694 44.8
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.1e-149 534.6 711 43.3
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.4e-149 533.5 702 42.9
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 6.8e-149 531.9 677 45.5
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 5.8e-148 528.9 690 44.3
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 5.8e-148 528.9 680 44.1
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 9.9e-148 528.1 714 45.0
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.4e-146 524.2 685 43.9
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 1.4e-146 524.2 697 44.2
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 4.2e-146 522.7 587 48.0
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-145 520.8 684 43.9
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.6e-145 520.8 684 43.4
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 6.0e-145 518.8 678 43.2
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.3e-144 517.7 666 43.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.5e-143 514.2 678 42.9
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.5e-143 513.5 702 42.6
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 5.6e-143 512.3 678 43.7
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 7.3e-143 511.9 598 47.0
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 9.6e-143 511.5 684 42.8
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.3e-142 511.1 647 42.8
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 2.6e-140 503.4 726 42.0
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.8e-140 502.3 669 41.9
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 3.8e-139 499.6 684 42.3
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.2e-137 494.6 580 48.8
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 6.0e-137 492.3 587 45.7
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.4e-133 480.3 667 41.4
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.3e-126 458.0 589 44.7
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.6e-124 450.3 715 37.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.9e-123 446.8 499 48.1
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.8e-118 430.3 640 39.5
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 4.1e-109 399.8 766 35.1
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 5.9e-108 396.0 499 46.3
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.5e-106 390.6 716 35.3
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.7e-105 387.1 717 35.1
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 8.2e-102 375.6 670 36.0
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.4e-101 374.8 684 35.8
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 5.2e-88 329.7 523 37.5
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.0e-79 301.2 565 34.3
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.1e-77 293.5 674 30.1
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.7e-73 280.0 513 35.1
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 5.6e-66 256.5 662 30.2
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.3e-51 208.8 390 35.9
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.1e-41 174.9 224 39.7
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 8.9e-40 169.5 212 40.6
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.2e-36 159.1 204 43.1
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.6e-33 148.7 316 32.9
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 2.9e-30 137.9 96 63.5
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.7e-27 128.6 98 60.2
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.3e-26 124.4 95 57.9
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.2e-23 115.9 84 60.7
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 7.6e-23 113.2 76 65.8
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 2.5e-18 98.2 127 36.2
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 2.6e-15 88.2 65 61.5
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 4.9e-14 84.0 115 39.1
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.1e-13 82.8 80 52.5
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 2.3e-11 75.1 83 39.8
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 5.1e-11 73.9 249 31.7
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 8.2e-09 66.6 491 23.2
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 3.1e-08 64.7 157 29.3


User provided reference genes

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