Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 8.1e-271 936.4 448 100.0
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 5.1e-31 139.8 150 55.3
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 2.5e-22 110.9 150 46.7
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 5.6e-22 109.8 150 45.3
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 7.3e-22 109.4 150 46.7
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 4.8e-21 106.7 150 45.3
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 2.4e-20 104.4 149 46.3
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 5.8e-19 99.8 152 40.1
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 9.9e-19 99.0 152 40.1
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 9.9e-19 99.0 152 40.1
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 1.3e-18 98.6 152 40.1
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 1.9e-17 94.7 146 39.7
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 2.4e-17 94.4 152 39.5
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 3.2e-17 94.0 140 44.3
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 7.1e-17 92.8 169 34.9
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 1.6e-16 91.7 144 41.0
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 2.1e-16 91.3 163 36.8
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 2.7e-16 90.9 148 38.5
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 2.7e-16 90.9 146 37.7
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 4.6e-16 90.1 137 42.3
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 4.6e-16 90.1 131 43.5
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 6.0e-16 89.7 145 39.3
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 6.0e-16 89.7 133 42.9
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 6.0e-16 89.7 147 39.5
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 6.0e-16 89.7 144 38.9
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 1.0e-15 89.0 140 42.9
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 1.0e-15 89.0 140 42.9
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 1.0e-15 89.0 144 39.6
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 1.7e-15 88.2 144 40.3
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.3e-15 87.8 146 38.4
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.3e-15 87.8 134 41.8
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 3.0e-15 87.4 144 38.2
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 3.0e-15 87.4 144 38.2
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 3.0e-15 87.4 159 37.1
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 3.9e-15 87.0 144 38.2
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 3.9e-15 87.0 139 41.7
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 5.1e-15 86.7 137 41.6
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 5.1e-15 86.7 130 40.8
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 6.6e-15 86.3 163 36.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 6.6e-15 86.3 155 38.1
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 6.6e-15 86.3 130 40.0
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 8.7e-15 85.9 193 36.3
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 8.7e-15 85.9 193 36.3
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 8.7e-15 85.9 163 36.8
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 8.7e-15 85.9 132 41.7
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 1.5e-14 85.1 143 38.5
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 1.5e-14 85.1 183 33.9
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 1.9e-14 84.7 138 40.6
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 2.5e-14 84.3 140 39.3
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 3.3e-14 84.0 160 36.9
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 3.3e-14 84.0 137 41.6
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.3e-14 84.0 153 38.6
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 3.3e-14 84.0 207 31.9
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 4.3e-14 83.6 163 36.8
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 4.3e-14 83.6 163 36.8
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 4.3e-14 83.6 132 43.2
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 5.6e-14 83.2 129 41.9
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 5.6e-14 83.2 137 39.4
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 9.6e-14 82.4 159 34.6
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 9.6e-14 82.4 162 36.4
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.6e-13 81.6 132 41.7
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 1.6e-13 81.6 132 40.9
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 1.6e-13 81.6 150 37.3
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 1.6e-13 81.6 128 39.8
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 1.6e-13 81.6 138 37.7
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 2.1e-13 81.3 147 38.1
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 2.8e-13 80.9 165 35.2
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 3.6e-13 80.5 75 53.3
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 3.6e-13 80.5 145 37.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 3.6e-13 80.5 143 37.8
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 3.6e-13 80.5 118 39.0
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 3.6e-13 80.5 181 33.7
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 4.8e-13 80.1 141 41.1
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 4.8e-13 80.1 161 36.6
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 4.8e-13 80.1 129 43.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 6.2e-13 79.7 143 38.5
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 6.2e-13 79.7 140 38.6
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 6.2e-13 79.7 145 39.3
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 6.2e-13 79.7 133 38.3
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 6.2e-13 79.7 152 36.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 8.1e-13 79.3 132 39.4
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 8.1e-13 79.3 175 34.3
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 8.1e-13 79.3 149 35.6
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 1.1e-12 79.0 146 37.7
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 1.1e-12 79.0 137 38.7
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 1.4e-12 78.6 132 40.2
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.4e-12 78.6 132 39.4
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 1.4e-12 78.6 144 37.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 1.8e-12 78.2 133 38.3
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 2.4e-12 77.8 147 36.1
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 2.4e-12 77.8 147 37.4
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 2.4e-12 77.8 132 39.4
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.4e-12 77.8 128 37.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.4e-12 77.8 128 37.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.4e-12 77.8 128 37.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.4e-12 77.8 128 37.5
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.1e-12 77.4 145 36.6
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 3.1e-12 77.4 154 35.7
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 4.0e-12 77.0 149 35.6
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.3e-12 76.6 145 35.9
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 5.3e-12 76.6 132 38.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 5.3e-12 76.6 155 34.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 5.3e-12 76.6 194 30.4
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 6.9e-12 76.3 155 33.5
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 6.9e-12 76.3 115 40.0
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 6.9e-12 76.3 131 39.7
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 6.9e-12 76.3 111 39.6
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 1.2e-11 75.5 130 36.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 1.2e-11 75.5 130 36.9
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 1.2e-11 75.5 126 38.1
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 1.2e-11 75.5 155 34.2
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 1.5e-11 75.1 139 36.7
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 1.5e-11 75.1 139 36.7
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 1.5e-11 75.1 139 36.7
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 1.5e-11 75.1 142 34.5
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 1.5e-11 75.1 131 36.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 2.0e-11 74.7 75 52.0
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.0e-11 74.7 75 52.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 2.6e-11 74.3 144 36.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 2.6e-11 74.3 146 35.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.6e-11 74.3 163 33.7
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 3.4e-11 73.9 138 34.1
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 3.4e-11 73.9 119 37.0
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 4.5e-11 73.6 131 36.6
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 7.6e-11 72.8 138 36.2
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 7.6e-11 72.8 154 33.8
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 9.9e-11 72.4 154 33.8
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 1.3e-10 72.0 144 38.2
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 1.3e-10 72.0 163 30.1
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 1.7e-10 71.6 155 34.2
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 2.2e-10 71.2 136 33.8
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 2.2e-10 71.2 136 33.8
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 2.2e-10 71.2 145 35.2
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.9e-10 70.9 135 33.3
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 3.8e-10 70.5 127 37.8
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.8e-10 70.5 131 36.6
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 4.9e-10 70.1 107 40.2
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 1.4e-09 68.6 166 31.9
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 3.2e-09 67.4 131 34.4
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.2e-09 67.4 163 31.9
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 4.2e-09 67.0 146 35.6
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 4.2e-09 67.0 131 36.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 9.3e-09 65.9 148 35.8
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 2.1e-08 64.7 154 31.2
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 6.0e-08 63.2 227 27.8
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 7.9e-08 62.8 154 31.8
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 3.0e-07 60.8 155 29.7
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 6.7e-07 59.7 139 34.5
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 4.3e-06 57.0 106 35.8


User provided reference genes

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