Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1895.9 1009 100.0
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1290.0 1013 67.5
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1283.9 1028 65.5
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1260.0 959 68.8
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1252.7 953 68.1
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1183.7 961 63.3
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1177.2 932 63.9
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1169.1 959 63.8
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1159.8 954 63.1
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1156.7 954 62.4
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1148.3 1018 60.3
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1146.7 1012 59.8
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1143.3 959 61.2
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1142.1 951 61.6
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1139.8 961 61.1
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1138.3 964 61.8
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1132.5 950 61.3
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1130.2 949 61.3
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1129.8 951 61.4
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1127.9 1019 58.6
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1126.3 1018 58.0
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1124.8 968 60.6
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1124.4 968 60.2
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1124.4 958 60.4
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1124.4 958 60.4
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1123.2 959 60.7
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1119.4 951 60.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1117.1 958 60.2
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1116.7 956 60.7
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1115.1 945 61.0
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1114.0 943 60.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1112.8 947 60.5
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1112.8 950 60.4
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1111.7 972 59.7
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1111.7 955 61.4
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1111.3 957 61.2
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1111.3 1011 58.5
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1110.9 959 59.9
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1109.4 1023 57.9
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1109.0 1012 58.6
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1106.7 961 59.8
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1104.4 957 59.0
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1104.0 943 60.0
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1103.6 1016 57.4
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1103.2 1031 57.5
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1102.0 949 60.7
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1101.7 961 59.9
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1100.5 962 59.7
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1099.3 991 58.7
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1097.4 905 61.7
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1095.9 945 59.2
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1093.2 955 59.9
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1092.8 951 59.4
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1092.4 1016 58.4
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1091.3 952 58.9
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1090.5 958 58.2
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1089.7 1020 57.0
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1088.6 1015 57.0
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1088.6 1016 56.5
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1087.0 1032 57.0
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1085.9 943 59.2
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1085.1 951 59.2
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1084.3 1019 56.1
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1083.9 951 58.8
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1083.2 944 60.0
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1080.1 1020 56.8
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1079.7 1017 56.4
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1078.9 995 57.6
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1078.5 1015 56.7
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1078.5 943 59.0
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1077.8 943 58.6
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1076.6 1019 56.4
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 6.9e-312 1073.5 1019 56.2
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.4e-311 1073.2 1023 56.3
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 1.4e-311 1072.8 1014 55.9
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 2.8e-311 1072.0 1020 56.5
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 3.5e-311 1071.6 1006 56.2
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 3.5e-311 1071.6 955 59.2
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 8.3e-311 1070.5 1006 56.1
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 8.3e-311 1070.5 1019 56.0
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 1.0e-310 1070.1 961 58.6
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 8.9e-310 1067.0 940 58.6
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 8.3e-308 1060.4 940 58.0
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 9.2e-307 1057.0 949 57.7
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.0e-305 1053.5 1010 55.3
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.3e-305 1053.1 1017 56.0
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 1.7e-305 1052.7 1014 54.8
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.7e-305 1052.7 1049 54.4
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.6e-303 1046.2 1061 53.4
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 6.2e-303 1044.3 957 57.5
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 3.1e-302 1042.0 1041 55.0
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 5.2e-302 1041.2 943 57.2
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 1.3e-300 1036.6 944 56.4
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 3.7e-300 1035.0 948 56.6
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 2.5e-296 1022.3 954 55.9
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.3e-296 1021.9 1026 53.4
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 3.3e-296 1021.9 954 55.7
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 2.4e-294 1015.8 1039 53.5
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 2.2e-292 1009.2 977 55.2
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 5.1e-289 998.0 825 61.8
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 3.3e-288 995.3 1015 53.9
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 5.6e-288 994.6 967 55.3
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 3.9e-281 971.8 852 57.9
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 8.7e-273 944.1 794 61.5
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 3.3e-272 942.2 787 62.3
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.1e-264 917.1 947 50.5
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 2.1e-263 912.9 788 59.9
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 2.2e-260 902.9 961 49.6
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 4.2e-259 898.7 1014 49.6
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.7e-258 896.0 960 48.9
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 1.5e-253 880.2 758 59.2
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.8e-246 856.7 956 47.8
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 4.7e-234 815.5 705 59.4
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.0e-234 814.7 743 58.3
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.0e-225 787.7 652 63.8
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.0e-213 746.9 960 44.0
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.0e-208 730.3 623 61.2
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.5e-205 719.5 629 60.6
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.7e-189 666.8 564 60.1
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 5.4e-182 642.5 559 59.4
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.7e-180 637.5 537 61.1
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.9e-171 607.4 708 46.2
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 5.1e-164 582.8 599 52.3
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 2.9e-159 567.0 970 38.9
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.9e-140 503.4 570 47.4
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 3.4e-136 490.3 1029 31.6
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 2.7e-133 480.7 481 54.3
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 2.6e-131 474.2 962 31.5
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.4e-121 441.8 614 41.2
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 4.2e-118 430.3 999 30.2
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.3e-115 420.6 578 44.8
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 4.1e-113 413.7 507 47.7
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 2.7e-112 411.0 320 63.8
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.3e-106 392.1 558 47.3
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.4e-99 367.5 301 60.8
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 5.7e-99 366.7 414 48.6
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.9e-89 335.1 259 64.9
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.9e-89 335.1 255 64.7
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 7.8e-88 329.7 266 62.0
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 3.3e-86 324.3 570 37.7
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 8.3e-82 309.7 276 57.6
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 9.5e-78 296.2 277 56.3
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 6.4e-74 283.5 382 44.5
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 1.2e-72 279.3 243 58.4
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 4.0e-68 264.2 424 40.6
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.0e-68 264.2 558 34.8
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.2e-68 263.8 219 60.7
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 5.8e-67 260.4 295 49.5
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.5e-62 245.7 245 51.8
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 6.2e-61 240.4 219 53.4
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.6e-59 233.4 579 31.3
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.6e-54 217.2 299 45.5
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 5.6e-54 217.2 257 45.9
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.0e-51 208.8 242 50.8
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 3.4e-51 208.0 189 54.5
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 4.9e-50 204.1 262 48.5
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 4.0e-44 184.5 427 33.0
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.5e-43 182.6 132 66.7
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.0e-43 182.2 225 46.7
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 1.9e-41 175.6 421 31.8
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 2.5e-41 175.3 155 60.0
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 4.3e-38 164.5 131 63.4
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.8e-37 161.0 163 54.6
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 9.3e-33 146.7 125 61.6
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.1e-28 131.3 170 47.6
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.5e-25 120.9 73 79.5
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.5e-25 120.9 73 79.5
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 9.4e-25 120.2 137 46.7
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 7.9e-24 117.1 119 48.7
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.1e-22 113.2 78 66.7
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 4.8e-21 107.8 171 38.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 6.9e-20 104.0 409 27.4
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.5e-19 101.3 108 52.8
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 5.0e-18 97.8 142 37.3
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 1.1e-17 96.7 232 30.6
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.5e-17 95.5 72 63.9
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 2.1e-16 92.4 187 35.8
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 3.6e-16 91.7 81 55.6
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 6.1e-16 90.9 167 33.5
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 5.7e-14 84.3 180 34.4
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 7.4e-06 57.4 53 50.9


User provided reference genes

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