Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 0.0e+00 1078.9 525 100.0
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.4e-226 787.7 524 75.4
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 9.3e-226 786.9 524 75.2
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 7.1e-218 760.8 522 73.4
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.5e-217 758.4 520 72.7
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 4.6e-217 758.1 522 73.6
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 3.0e-216 755.4 514 73.9
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.3e-214 750.0 523 72.1
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.6e-214 749.6 521 72.4
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.8e-214 748.0 520 71.9
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 6.2e-214 747.7 521 72.0
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.1e-213 746.9 524 70.8
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 9.9e-212 740.3 583 65.4
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.7e-211 739.6 523 70.6
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 8.4e-211 737.3 524 69.8
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.4e-210 736.5 523 70.0
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.4e-210 735.7 524 70.2
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.4e-210 735.7 523 70.7
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 3.2e-210 735.3 538 69.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 7.1e-210 734.2 520 70.6
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 7.1e-210 734.2 520 70.6
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.6e-209 733.0 520 70.4
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.6e-209 733.0 526 70.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.1e-209 732.6 523 69.4
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.7e-209 732.3 523 69.6
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 2.7e-209 732.3 521 70.6
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.5e-209 731.9 520 70.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 6.0e-209 731.1 522 69.7
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 7.9e-209 730.7 524 69.1
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 2.3e-208 729.2 525 69.3
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.0e-208 728.8 523 69.0
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 5.1e-208 728.0 524 69.7
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 6.7e-208 727.6 514 70.4
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 8.7e-208 727.2 514 70.6
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.1e-207 726.9 524 69.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 1.1e-207 726.9 519 69.7
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.5e-207 725.7 523 69.4
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.5e-207 725.7 521 68.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 4.3e-207 724.9 523 69.8
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 4.3e-207 724.9 524 68.7
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.6e-206 723.0 525 68.8
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.6e-206 723.0 523 69.2
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.1e-206 722.6 523 68.8
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.1e-206 722.6 524 68.9
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.1e-206 722.6 528 68.6
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.8e-206 722.2 524 69.3
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.8e-206 722.2 595 63.7
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 6.2e-206 721.1 516 69.2
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.4e-205 719.2 525 68.4
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 4.0e-205 718.4 526 69.4
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.9e-205 717.6 525 68.0
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 9.0e-205 717.2 529 68.6
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 9.0e-205 717.2 526 67.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 9.0e-205 717.2 521 68.1
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.0e-204 716.1 519 68.8
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.6e-204 715.7 522 68.2
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.3e-203 713.4 520 68.3
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.3e-203 713.4 520 68.3
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.7e-203 713.0 523 67.5
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.7e-203 713.0 523 67.5
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.2e-203 712.6 524 67.9
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.9e-203 712.2 519 69.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 2.9e-203 712.2 526 66.7
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 2.9e-203 712.2 516 68.4
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 4.9e-203 711.4 523 68.5
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 6.5e-203 711.1 524 67.6
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-202 710.3 519 68.8
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.9e-202 709.5 520 68.7
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 4.2e-202 708.4 523 67.5
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 5.5e-202 708.0 522 67.4
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.1e-202 707.6 523 68.5
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 9.3e-202 707.2 519 68.8
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 2.1e-201 706.1 523 66.7
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.7e-201 705.7 519 68.6
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 4.6e-201 704.9 524 67.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.0e-200 703.7 524 66.0
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 3.3e-199 698.7 521 66.4
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.3e-199 698.7 522 66.1
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 3.3e-199 698.7 493 71.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.8e-198 695.7 520 65.6
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 3.1e-197 692.2 522 65.5
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.3e-195 686.8 524 65.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 4.2e-194 681.8 526 64.3
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 9.3e-194 680.6 499 69.1
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 2.1e-193 679.5 519 65.7
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.2e-190 669.5 523 63.7
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.8e-190 669.1 519 63.8
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 4.8e-190 668.3 494 67.6
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 6.3e-190 667.9 491 68.4
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 6.3e-190 667.9 520 64.4
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.4e-189 666.0 524 62.6
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.5e-188 663.3 477 69.2
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.6e-185 652.1 525 62.7
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.0e-184 650.6 488 66.6
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.8e-184 649.8 519 62.6
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.8e-182 642.5 512 62.5
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 4.1e-181 638.6 527 60.5
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.4e-180 635.6 519 61.1
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.4e-178 630.2 526 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.7e-177 625.9 511 60.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 3.1e-173 612.5 512 59.0
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.2e-172 610.5 522 57.7
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 8.5e-171 604.4 520 56.9
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.2e-169 600.5 524 60.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.0e-167 593.2 416 71.4
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 4.8e-166 588.6 427 69.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 2.7e-164 582.8 512 57.2
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.3e-163 580.5 425 68.7
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 7.2e-162 574.7 521 54.7
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 2.1e-161 573.2 426 69.0
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.2e-160 568.5 518 54.8
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.2e-159 567.4 441 65.3
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.4e-157 560.5 534 52.4
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 6.5e-155 551.6 473 60.3
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.3e-152 543.1 521 57.2
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 9.8e-151 537.7 521 52.0
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.3e-150 537.3 521 52.0
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 7.0e-149 531.6 511 50.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.8e-145 519.6 523 51.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.3e-139 500.7 328 74.4
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.5e-138 496.5 427 58.8
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.0e-135 486.9 422 58.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.3e-131 473.4 516 47.5
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.2e-129 467.6 467 54.6
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 6.4e-118 428.7 517 44.3
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.4e-109 401.0 256 78.1
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.9e-101 374.0 274 68.6
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 3.2e-101 373.2 438 49.1
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 9.3e-85 318.5 278 57.9
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.3e-74 283.1 157 85.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 2.4e-72 277.3 228 62.3
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 7.4e-66 255.8 141 85.8
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 6.3e-65 252.7 135 84.4
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.9e-63 246.1 205 59.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 8.5e-62 242.3 134 85.1
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-53 214.9 262 50.4
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.1e-48 196.8 108 77.8
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 5.5e-45 186.4 137 67.9
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.1e-40 170.6 167 53.3
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.0e-38 163.3 88 86.4
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.2e-31 142.1 82 84.1
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 6.6e-30 136.3 125 58.4
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.3e-25 122.1 219 35.6
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 2.4e-24 117.9 69 76.8
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.0e-22 110.9 78 69.2
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 5.6e-21 106.7 57 78.9
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.8e-20 104.4 72 62.5
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 6.8e-19 99.8 133 43.6
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.5e-18 98.6 89 58.4
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 2.3e-14 84.7 96 47.9
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 5.0e-14 83.6 121 38.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.9e-13 81.6 38 89.5
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.6e-10 71.2 81 49.4
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.3e-09 68.9 35 85.7
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.1e-08 65.9 61 55.7
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 6.0e-07 60.1 35 74.3
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 1.0e-06 59.3 69 50.7


User provided reference genes

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