Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 6.1e-109 397.5 203 100.0
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.3e-90 336.7 203 82.3
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 3.4e-83 312.0 203 75.9
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 3.4e-83 312.0 203 77.8
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 7.5e-83 310.8 201 76.1
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.3e-82 310.1 201 76.1
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.7e-82 308.5 201 76.1
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 3.7e-82 308.5 201 78.1
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.9e-82 308.1 201 76.1
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 4.9e-82 308.1 203 75.9
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.4e-81 306.6 201 77.6
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 2.7e-80 302.4 240 71.2
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 4.6e-80 301.6 201 75.1
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 4.6e-80 301.6 201 75.1
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 1.0e-79 300.4 201 74.1
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.0e-79 300.4 203 73.9
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.3e-79 300.1 201 73.6
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 3.9e-79 298.5 203 71.9
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 5.0e-79 298.1 201 74.6
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.9e-78 296.2 201 74.1
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 5.6e-78 294.7 203 70.9
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 7.3e-78 294.3 198 74.7
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.2e-77 293.5 201 71.6
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 2.8e-77 292.4 199 72.9
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 3.6e-77 292.0 204 73.5
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 6.2e-77 291.2 203 70.4
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 6.2e-77 291.2 202 72.8
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 8.1e-77 290.8 199 72.9
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.1e-76 290.4 203 70.4
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.4e-76 290.0 203 71.4
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.8e-76 289.7 203 71.9
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 2.3e-76 289.3 200 73.0
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 2.3e-76 289.3 200 73.0
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.3e-76 289.3 200 73.0
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 2.3e-76 289.3 199 71.9
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 3.1e-76 288.9 203 70.4
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 4.0e-76 288.5 200 72.0
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.0e-76 288.5 200 72.0
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.0e-76 288.5 203 69.5
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 5.2e-76 288.1 198 72.2
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 6.8e-76 287.7 198 71.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.5e-75 286.6 203 68.5
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 2.6e-75 285.8 198 71.7
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 3.4e-75 285.4 201 68.2
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 4.4e-75 285.0 203 70.0
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 5.8e-75 284.6 198 68.7
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 5.8e-75 284.6 203 68.0
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 7.5e-75 284.3 201 67.2
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 7.5e-75 284.3 201 67.2
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 7.5e-75 284.3 201 70.6
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 9.8e-75 283.9 200 71.0
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 9.8e-75 283.9 198 72.2
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.3e-74 283.5 203 68.0
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.3e-74 283.5 200 68.0
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.3e-74 283.5 201 67.2
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 1.3e-74 283.5 193 73.1
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.7e-74 283.1 194 72.7
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 2.2e-74 282.7 201 67.2
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 2.9e-74 282.3 199 72.9
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.7e-74 282.0 198 70.7
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 3.7e-74 282.0 203 70.0
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 3.7e-74 282.0 201 69.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 8.3e-74 280.8 203 66.0
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.1e-73 280.4 198 71.2
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.1e-73 280.4 200 70.0
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.4e-73 280.0 194 72.2
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.9e-73 279.6 203 70.9
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 3.2e-73 278.9 203 66.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 3.2e-73 278.9 203 66.5
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 3.2e-73 278.9 201 68.7
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 9.2e-73 277.3 188 73.9
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-72 276.9 203 66.5
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-72 276.9 203 66.0
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.2e-72 276.9 203 66.5
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 2.1e-72 276.2 200 68.0
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 2.7e-72 275.8 203 65.5
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.7e-72 275.8 200 69.5
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 3.5e-72 275.4 201 69.2
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.0e-72 274.6 200 68.0
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 6.0e-72 274.6 200 68.0
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 7.8e-72 274.2 203 65.0
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 7.8e-72 274.2 206 65.0
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.3e-71 273.5 201 68.2
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 2.3e-71 272.7 200 68.0
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.1e-71 271.6 210 67.1
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.6e-71 271.2 201 69.2
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 6.6e-71 271.2 198 67.7
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 8.6e-71 270.8 194 68.6
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 8.6e-71 270.8 199 66.8
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.5e-70 270.0 198 67.2
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.5e-70 269.2 198 69.2
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.3e-70 268.9 199 65.8
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 7.3e-70 267.7 200 67.0
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.2e-69 266.9 201 67.2
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.2e-69 266.9 205 67.3
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 2.8e-69 265.8 198 69.2
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 3.6e-69 265.4 203 69.0
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.8e-68 263.1 200 67.0
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.5e-67 260.0 201 63.2
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 9.9e-67 257.3 181 69.1
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.3e-66 256.9 182 69.8
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-66 256.5 176 71.6
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 3.7e-66 255.4 198 62.6
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.1e-65 253.8 178 70.2
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.9e-65 253.1 184 67.9
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 2.4e-65 252.7 204 62.3
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.1e-64 249.6 181 68.5
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 7.8e-64 247.7 329 45.9
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.3e-63 246.1 251 53.8
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 3.9e-63 245.4 200 62.5
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 8.6e-63 244.2 168 75.6
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.5e-62 243.4 200 62.5
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.5e-62 243.4 203 62.6
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 2.5e-62 242.7 200 62.0
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 3.3e-62 242.3 175 69.7
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 4.3e-62 241.9 198 61.6
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 7.3e-62 241.1 198 58.6
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.6e-61 238.8 184 64.1
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.2e-58 229.6 221 55.2
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.6e-54 214.2 235 52.8
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 2.1e-53 213.0 222 54.5
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.4e-51 205.7 225 51.6
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 7.6e-51 204.5 195 52.8
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 9.9e-51 204.1 167 64.1
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 3.2e-49 199.1 191 51.8
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 7.3e-46 188.0 128 73.4
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 2.6e-43 179.5 112 76.8
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.6e-43 179.5 116 80.2
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 7.6e-43 177.9 192 49.5
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 3.8e-42 175.6 192 49.0
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 6.0e-40 168.3 118 70.3
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.5e-38 163.7 176 50.6
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 2.5e-38 162.9 105 74.3
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 4.9e-34 148.7 85 83.5
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 2.5e-33 146.4 112 64.3
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.2e-32 144.1 144 51.4
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.3e-30 135.6 83 78.3
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 7.4e-30 134.8 88 70.5
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 4.8e-29 132.1 211 36.5
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 6.3e-29 131.7 110 62.7
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.2e-29 131.3 85 74.1
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 8.4e-26 121.3 87 67.8
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.2e-25 119.4 84 67.9
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 2.3e-23 113.2 205 34.6
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.7e-23 111.7 121 52.1
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 7.4e-22 108.2 73 75.3
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 2.8e-21 106.3 100 58.0
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 6.3e-21 105.1 130 45.4
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.6e-19 99.8 72 65.3
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-18 96.7 77 62.3
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.8e-18 95.9 68 69.1
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 3.9e-15 85.9 74 58.1
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-14 84.3 70 60.0
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 1.1e-14 84.3 196 32.1
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.5e-14 83.2 45 82.2
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.4e-14 81.6 115 44.3
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.7e-13 80.5 102 46.1
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 2.2e-13 80.1 75 57.3
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.1e-12 77.8 195 30.8
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 3.4e-11 72.8 49 63.3
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.1e-09 67.8 47 66.0
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 2.7e-08 63.2 48 64.6


User provided reference genes

Program Settings