Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.3e-99 366.3 180 100.0
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 5.9e-63 244.6 187 70.6
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.5e-45 186.0 202 54.0
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 6.7e-43 177.9 201 50.2
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 7.5e-42 174.5 210 49.5
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.4e-34 149.1 247 42.1
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 4.4e-34 148.7 250 41.6
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 4.4e-34 148.7 250 41.6
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-33 147.1 256 39.1
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.8e-33 146.0 224 43.8
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.1e-29 134.0 230 41.3
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.9e-29 133.3 244 37.7
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 5.5e-29 131.7 234 39.7
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 9.5e-29 131.0 221 39.8
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 4.7e-28 128.6 229 38.9
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 8.0e-28 127.9 221 38.9
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.0e-27 125.9 215 41.9
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.2e-27 125.2 215 41.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.2e-27 125.2 215 41.4
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 6.8e-27 124.8 233 40.8
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 6.8e-27 124.8 233 40.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 6.8e-27 124.8 213 41.8
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 8.8e-27 124.4 226 40.3
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 8.8e-27 124.4 213 41.8
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.5e-26 123.6 235 38.3
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.0e-26 123.2 229 38.4
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.6e-26 122.9 213 41.3
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 7.5e-26 121.3 226 38.1
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 9.8e-26 120.9 228 36.4
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.3e-25 120.6 223 37.7
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.7e-25 120.2 223 37.7
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.2e-25 119.8 237 37.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.2e-25 119.8 232 37.5
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.8e-25 119.4 235 37.0
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 3.7e-25 119.0 248 33.9
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.7e-25 119.0 232 37.5
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 4.9e-25 118.6 243 38.7
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 4.9e-25 118.6 243 38.7
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 6.3e-25 118.2 231 35.1
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.1e-24 117.5 236 37.7
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.1e-24 117.5 230 37.0
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.4e-24 117.1 230 36.5
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.4e-24 117.1 230 36.5
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.8e-24 116.7 215 36.7
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 2.4e-24 116.3 217 38.7
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 2.4e-24 116.3 218 40.4
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 4.1e-24 115.5 241 34.9
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 7.0e-24 114.8 236 36.4
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.2e-23 114.0 211 38.4
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.6e-23 113.6 209 38.3
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.6e-23 113.6 213 36.6
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.6e-23 113.6 229 36.2
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 2.0e-23 113.2 211 36.0
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 2.7e-23 112.8 221 36.7
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 2.7e-23 112.8 229 35.4
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 3.5e-23 112.5 235 35.7
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.8e-23 111.3 228 36.0
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 7.8e-23 111.3 228 36.0
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.3e-22 109.8 211 38.4
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 2.9e-22 109.4 223 36.8
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.9e-22 109.4 229 34.1
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 5.0e-22 108.6 222 36.0
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 5.0e-22 108.6 237 35.4
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-21 107.5 231 34.6
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-21 107.5 231 34.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.1e-21 107.5 189 39.7
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 2.5e-21 106.3 233 38.2
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.3e-21 105.9 242 34.7
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.3e-21 105.9 227 36.6
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.3e-21 105.9 232 34.9
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.6e-21 105.1 201 36.8
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.6e-21 105.1 231 36.4
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 7.3e-21 104.8 243 32.9
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.5e-21 104.4 232 36.2
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.6e-20 103.6 217 35.5
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.1e-20 103.2 208 37.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.8e-20 102.8 247 32.8
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 4.7e-20 102.1 232 34.5
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 4.7e-20 102.1 247 33.2
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.0e-20 101.3 236 35.2
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.8e-19 100.1 217 34.1
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 4.0e-19 99.0 197 38.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 5.2e-19 98.6 199 35.2
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 8.9e-19 97.8 220 35.9
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.5e-18 97.1 228 33.3
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.5e-18 97.1 87 54.0
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 2.0e-18 96.7 217 34.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.6e-18 96.3 193 36.3
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.6e-18 96.3 230 34.8
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.3e-17 94.0 229 33.6
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 1.7e-17 93.6 82 59.8
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.7e-17 93.6 211 33.2
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.2e-17 93.2 87 57.5
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 3.7e-17 92.4 137 41.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 3.7e-17 92.4 212 36.3
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 8.3e-17 91.3 209 31.6
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 8.3e-17 91.3 202 35.6
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.1e-16 90.9 162 37.0
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.8e-16 90.1 82 57.3
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.1e-16 89.0 216 28.7
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.6e-15 87.0 49 79.6
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 2.0e-15 86.7 191 34.0
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.7e-14 83.6 232 31.9
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.3e-14 83.2 160 35.6
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.0e-14 82.8 197 31.5
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.2e-12 77.4 186 34.9
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.6e-12 77.0 219 30.1
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.6e-12 75.9 205 31.2
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 8.0e-12 74.7 201 32.3
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.4e-10 69.3 202 31.2
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 5.8e-10 68.6 44 70.5
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.3e-09 67.4 47 59.6
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.7e-09 67.0 176 31.8
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 2.9e-09 66.2 41 65.9
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 3.7e-09 65.9 209 29.7
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 4.9e-09 65.5 216 30.1
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.4e-09 65.1 55 54.5
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 8.3e-09 64.7 80 47.5
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.4e-08 63.9 208 30.3
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.4e-08 63.9 208 30.3
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.4e-08 63.9 202 30.2
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-08 63.5 205 31.2
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-08 63.5 205 30.2
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-08 63.5 200 31.0
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-08 63.5 205 30.2
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.9e-08 63.5 205 29.8
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.4e-08 63.2 216 28.2
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.2e-08 62.8 64 50.0
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 4.1e-08 62.4 221 28.1
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 7.0e-08 61.6 177 30.5
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 7.0e-08 61.6 177 30.5
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.2e-07 60.8 223 26.5
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.2e-07 60.8 192 32.3
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.6e-07 60.5 232 26.7
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.6e-07 60.5 193 31.6
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.6e-07 60.5 193 31.6
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.6e-07 60.5 193 31.6
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.7e-07 59.7 37 64.9
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 3.5e-07 59.3 200 28.0
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 4.6e-07 58.9 213 28.6
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 4.6e-07 58.9 213 28.6
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 6.0e-07 58.5 48 52.1
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.3e-06 56.6 40 60.0
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.9e-06 55.8 198 27.8


User provided reference genes

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