Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09268 Striga asiatica HOM05D007113 ORTHO05D008859 9.5e-47 190.3 130 100.0
SGA_v2.0_scaffold78G25464 Striga asiatica HOM05D007113 ORTHO05D008859 2.2e-35 152.5 133 67.7
MD04G1149600 Malus domestica HOM05D007113 ORTHO05D008859 6.2e-22 107.8 114 51.8
PGR004G1045 Punica granatum HOM05D007113 ORTHO05D008859 8.1e-22 107.5 71 70.4
ECA238G3418 Erigeron canadensis HOM05D007113 ORTHO05D008859 1.1e-21 107.1 85 65.9
Gohir.D01G216000 Gossypium hirsutum HOM05D007113 ORTHO05D008859 1.1e-21 107.1 115 51.3
SalBow6G1146 Salvia bowleyana HOM05D007113 ORTHO05D008859 1.1e-21 107.1 130 53.1
GSVIVG01033979001 Vitis vinifera HOM05D007113 ORTHO05D008859 1.1e-21 107.1 66 74.2
Duzib093G1147 Durio zibethinus HOM05D007113 ORTHO05D008859 1.4e-21 106.7 69 69.6
Eucgr.K02991 Eucalyptus grandis HOM05D007113 ORTHO05D008859 1.4e-21 106.7 115 52.2
Gorai.002G262200 Gossypium raimondii HOM05D007113 ORTHO05D008859 1.4e-21 106.7 115 51.3
MD12G1164000 Malus domestica HOM05D007113 ORTHO05D008859 1.4e-21 106.7 114 51.8
Gohir.A01G226400 Gossypium hirsutum HOM05D007113 ORTHO05D008859 1.8e-21 106.3 115 51.3
Nn8g40109 Nelumbo nucifera HOM05D007113 ORTHO05D008859 1.8e-21 106.3 115 51.3
Atru.chr8.2216 Acer truncatum HOM05D007113 ORTHO05D008859 2.4e-21 105.9 66 74.2
CSS0048161 Camellia sinensis var. sinensis HOM05D007113 ORTHO05D008859 2.4e-21 105.9 65 70.8
Ciclev10013049m.g Citrus clementina HOM05D007113 ORTHO05D008859 2.4e-21 105.9 87 63.2
CDE03G0108 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 6.8e-21 104.4 84 65.5
COL.COLO4_14561 Corchorus olitorius HOM05D007113 ORTHO05D008859 6.8e-21 104.4 84 65.5
TAR623G1648 Trochodendron aralioides HOM05D007113 ORTHO05D008859 6.8e-21 104.4 111 52.3
ATR0618G049 Amborella trichopoda HOM05D007113 ORTHO05D008859 1.2e-20 103.6 85 64.7
Lj3g0022517 Lotus japonicus HOM05D007113 ORTHO05D008859 2.6e-20 102.4 76 65.8
DCAR_028817 Daucus carota HOM05D007113 ORTHO05D008859 3.4e-20 102.1 128 49.2
FAN05G2893 Fragaria x ananassa HOM05D007113 ORTHO05D008859 3.4e-20 102.1 74 66.2
FAN09G0121 Fragaria x ananassa HOM05D007113 ORTHO05D008859 3.4e-20 102.1 74 66.2
FAN14G1367 Fragaria x ananassa HOM05D007113 ORTHO05D008859 3.4e-20 102.1 74 66.2
HanXRQChr14g0460151 Helianthus annuus HOM05D007113 ORTHO05D008859 3.4e-20 102.1 76 65.8
Thecc.05G019300 Theobroma cacao HOM05D007113 ORTHO05D008859 3.4e-20 102.1 58 79.3
CDE04G2391 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 4.4e-20 101.7 84 63.1
Oeu028599.1 Olea europaea HOM05D007113 ORTHO05D008859 4.4e-20 101.7 128 48.4
RcHm_v2.0_Chr3g0463511 Rosa chinensis HOM05D007113 ORTHO05D008859 4.4e-20 101.7 71 67.6
Migut.F01372 Erythranthe guttata HOM05D007113 ORTHO05D008859 5.8e-20 101.3 58 79.3
THA.LOC104805827 Tarenaya hassleriana HOM05D007113 ORTHO05D008859 5.8e-20 101.3 128 47.7
FvH4_6g11730 Fragaria vesca HOM05D007113 ORTHO05D008859 7.6e-20 100.9 74 66.2
Dinv34405 Davidia involucrata HOM05D007113 ORTHO05D008859 1.3e-19 100.1 68 69.1
unitig_62.g23930 Utricularia gibba HOM05D000230 ORTHO05D000176 1.3e-19 100.1 115 49.6
AT2G38140 Arabidopsis thaliana HOM05D007113 ORTHO05D008859 1.7e-19 99.8 115 48.7
Glyma.03G063200 Glycine max HOM05D007113 ORTHO05D008859 1.7e-19 99.8 76 65.8
vmacro06980 Vaccinium macrocarpon HOM05D007113 ORTHO05D008859 1.7e-19 99.8 77 58.4
CANSAT35G0395 Cannabis sativa HOM05D007113 ORTHO05D008859 2.2e-19 99.4 70 62.9
CARHR132730 Cardamine hirsuta HOM05D007113 ORTHO05D008859 2.2e-19 99.4 67 68.7
A05p07890 Brassica napus HOM05D007113 ORTHO05D008859 2.9e-19 99.0 68 70.6
VMungo1127G1807 Vigna mungo HOM05D007113 ORTHO05D008859 3.8e-19 98.6 61 72.1
Cc02_g06720 Coffea canephora HOM05D007113 ORTHO05D008859 4.9e-19 98.2 66 72.7
Lsat_1_v5_gn_2_121221 Lactuca sativa HOM05D007113 ORTHO05D008859 4.9e-19 98.2 68 70.6
Peaxi162Scf00957g00229 Petunia axillaris HOM05D011221 ORTHO05D013370 4.9e-19 98.2 121 47.1
ClCG04G007070 Citrullus lanatus HOM05D007113 ORTHO05D008859 6.4e-19 97.8 67 70.1
FAN02G3283 Fragaria x ananassa HOM05D008730 ORTHO05D008859 6.4e-19 97.8 60 73.3
Hma1.2p1_0362F.1_g136060 Hydrangea macrophylla HOM05D007113 ORTHO05D008859 6.4e-19 97.8 72 68.1
Phvul.004G171400 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 8.4e-19 97.4 61 70.5
Sed0004762 Sechium edule HOM05D007113 ORTHO05D008859 8.4e-19 97.4 63 73.0
Lsat_1_v5_gn_9_63261 Lactuca sativa HOM05D007113 ORTHO05D008859 1.1e-18 97.1 68 70.6
arahy.Tifrunner.gnm1.ann1.J29A80 Arachis hypogaea HOM05D007113 ORTHO05D008859 1.4e-18 96.7 57 73.7
C04p09540 Brassica napus HOM05D007113 ORTHO05D008859 1.4e-18 96.7 115 49.6
BolC4t22560H Brassica oleracea HOM05D007113 ORTHO05D008859 1.4e-18 96.7 115 49.6
Aa31sc189G20 Aethionema arabicum HOM05D007113 ORTHO05D008859 1.9e-18 96.3 61 72.1
BraA05t19755Z Brassica rapa HOM05D007113 ORTHO05D008859 1.9e-18 96.3 115 49.6
Solyc05g052710.3 Solanum lycopersicum HOM05D007113 ORTHO05D008859 1.9e-18 96.3 64 70.3
Nitab4.5_0008493g0040 Nicotiana tabacum HOM05D007113 ORTHO05D008859 2.4e-18 95.9 63 71.4
TWI74G0516 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 2.4e-18 95.9 67 70.1
FAN14G0869 Fragaria x ananassa HOM05D008730 ORTHO05D010922 3.2e-18 95.5 60 71.7
Nitab4.5_0000802g0080 Nicotiana tabacum HOM05D007113 ORTHO05D008859 3.2e-18 95.5 63 71.4
Haze_20976 Corylus avellana HOM05D007113 ORTHO05D008859 4.2e-18 95.1 115 47.8
Sopen05g031230 Solanum pennellii HOM05D007113 ORTHO05D008859 4.2e-18 95.1 113 47.8
MELO3C003245.2 Cucumis melo HOM05D007113 ORTHO05D008859 5.4e-18 94.7 71 64.8
PGSC0003DMG400027129 Solanum tuberosum HOM05D007113 ORTHO05D008859 5.4e-18 94.7 113 48.7
Manes.08G090600 Manihot esculenta HOM05D007113 ORTHO05D008859 9.2e-18 94.0 56 75.0
Phvul.010G003200 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 1.6e-17 93.2 55 74.5
Psat7g246120 Pisum sativum HOM05D007113 ORTHO05D008859 2.1e-17 92.8 70 65.7
TWI77G0060 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 2.1e-17 92.8 66 66.7
CsaV3_4G026180 Cucumis sativus L. HOM05D007113 ORTHO05D008859 2.7e-17 92.4 71 62.0
Glyma.01G114800 Glycine max HOM05D007113 ORTHO05D008859 4.6e-17 91.7 76 61.8
Nitab4.5_0004338g0130 Nicotiana tabacum HOM05D007113 ORTHO05D008859 4.6e-17 91.7 54 75.9
arahy.Tifrunner.gnm1.ann1.62SCQ6 Arachis hypogaea HOM05D007113 ORTHO05D008859 6.0e-17 91.3 53 75.5
Os05g0186000 Oryza sativa ssp. japonica HOM05D007113 ORTHO05D008859 6.0e-17 91.3 64 70.3
HPP92_019871 Vanilla planifolia HOM05D007113 ORTHO05D008859 7.8e-17 90.9 84 52.4
Zm00001eb144250 Zea mays HOM05D007113 ORTHO05D008859 7.8e-17 90.9 71 60.6
Medtr4g015540 Medicago truncatula HOM05D007113 ORTHO05D008859 1.0e-16 90.5 75 57.3
Actinidia29691 Actinidia chinensis HOM05D007113 ORTHO05D008859 1.3e-16 90.1 55 72.7
Lalb_Chr07g0193491 Lupinus albus HOM05D007113 ORTHO05D008859 1.3e-16 90.1 58 69.0
CiPaw.10G155700 Carya illinoinensis HOM05D007113 ORTHO05D008859 2.3e-16 89.4 60 66.7
PSO384G2929 Papaver somniferum HOM05D007113 ORTHO05D008859 2.3e-16 89.4 74 62.2
PSO339G1456 Papaver somniferum HOM05D007113 ORTHO05D008859 3.0e-16 89.0 74 62.2
Potri.016G113700 Populus trichocarpa HOM05D007113 ORTHO05D008859 3.9e-16 88.6 76 57.9
Rhsim03G0141800 Rhododendron simsii HOM05D007113 ORTHO05D008859 3.9e-16 88.6 152 41.4
Hund23901 Selenicereus undatus HOM05D007113 ORTHO05D008859 3.9e-16 88.6 66 62.1
CAN.G503.7 Capsicum annuum HOM05D007113 ORTHO05D008859 8.7e-16 87.4 51 76.5
Cfa017230 Carpinus fangiana HOM05D007113 ORTHO05D008859 8.7e-16 87.4 55 69.1
Ca_20298_v3 Cicer arietinum L. HOM05D007113 ORTHO05D008859 1.5e-15 86.7 76 56.6
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.5e-15 86.7 74 62.2
Oeu025646.1 Olea europaea HOM05D007113 ORTHO05D008859 1.5e-15 86.7 74 62.2
TPR.G13351 Trifolium pratense HOM05D007113 ORTHO05D008859 1.5e-15 86.7 59 64.4
Aqoxy4G02617 Aquilegia oxysepala HOM05D007113 ORTHO05D008859 1.9e-15 86.3 75 57.3
Sc11g0007190 Simmondsia chinensis HOM05D007113 ORTHO05D008859 3.3e-15 85.5 60 63.3
Haze_17209 Corylus avellana HOM05D007113 ORTHO05D008859 5.6e-15 84.7 68 58.8
arahy.Tifrunner.gnm1.ann1.C0BXE8 Arachis hypogaea HOM05D007113 ORTHO05D008859 7.3e-15 84.3 66 62.1
QL08p062975 Quercus lobata HOM05D007113 ORTHO05D008859 2.8e-14 82.4 71 57.7
EL10Ac2g04810 Beta vulgaris HOM05D007113 ORTHO05D008859 3.6e-14 82.0 72 59.7
SEGI_38672 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 6.2e-14 81.3 79 55.7
Ah.16g103370 Amaranthus hybridus HOM05D007113 ORTHO05D008859 1.1e-13 80.5 61 62.3
SEGI_10938 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 1.4e-13 80.1 79 54.4
arahy.Tifrunner.gnm1.ann1.CDY6H8 Arachis hypogaea HOM05D007113 ORTHO05D008859 6.9e-13 77.8 66 59.1
TWI53G1153 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 2.2e-11 72.8 52 67.3
Carub.0004s2011 Capsella rubella HOM05D007113 ORTHO05D008859 8.4e-11 70.9 115 39.1
Thhalv10017376m.g Eutrema salsugineum HOM05D007113 ORTHO05D008859 8.4e-11 70.9 115 40.9
Mapoly0005s0194 Marchantia polymorpha HOM05D007113 ORTHO05D008859 1.1e-10 70.5 85 48.2
AL4G35140 Arabidopsis lyrata HOM05D007113 ORTHO05D008859 3.2e-10 68.9 115 39.1
Sp4g20460 Schrenkiella parvula HOM05D007113 ORTHO05D008859 3.2e-10 68.9 115 40.9
AagrBONN_evm.TU.Sc2ySwM_362.1890 Anthoceros agrestis HOM05D007113 ORTHO05D008859 2.1e-09 66.2 69 52.2
Pp3c9_12290 Physcomitrium patens HOM05D007113 ORTHO05D008859 1.9e-07 59.7 83 44.6
Pp3c15_12810 Physcomitrium patens HOM05D007113 ORTHO05D008859 7.3e-07 57.8 67 50.7
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 1.3e-06 57.0 40 67.5
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 1.6e-06 56.6 47 57.4
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 1.6e-06 56.6 47 57.4
VMungo0331G1181 Vigna mungo HOM05D007113 ORTHO05D008859 2.1e-06 56.2 73 45.2
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 6.2e-06 54.7 39 64.1


User provided reference genes

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