Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 3.2e-116 421.8 217 100.0
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 3.1e-26 122.9 222 41.4
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 3.8e-24 115.9 236 41.5
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 6.5e-24 115.2 199 44.2
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.4e-23 114.0 224 42.4
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.6e-22 109.4 240 38.3
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 3.6e-22 109.4 235 40.9
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 4.6e-22 109.0 235 40.9
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 9.7e-20 101.3 210 39.5
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.5e-17 94.0 210 39.5
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 2.9e-16 89.7 194 39.7
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 5.0e-16 89.0 186 40.3
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 5.5e-15 85.5 187 39.0
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 9.4e-15 84.7 204 38.2
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 1.0e-13 81.3 195 39.5
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.4e-13 80.9 151 41.1
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 3.9e-13 79.3 208 36.1
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 2.6e-12 76.6 74 47.3
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 4.4e-12 75.9 182 34.6
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.4e-12 75.9 205 36.6
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.4e-12 75.1 178 36.0
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 9.7e-12 74.7 187 36.9
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.3e-11 74.3 194 39.7
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.7e-11 73.9 182 34.1
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.2e-11 73.6 176 38.1
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 2.8e-11 73.2 91 50.5
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 2.8e-11 73.2 210 33.8
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.7e-11 72.8 193 39.4
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 4.8e-11 72.4 191 39.8
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.4e-10 70.9 225 32.9
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.4e-10 70.9 174 37.4
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 2.4e-10 70.1 49 65.3
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 3.1e-10 69.7 190 38.4
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 4.1e-10 69.3 187 35.3
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 5.3e-10 68.9 182 33.0
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 5.3e-10 68.9 74 58.1
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 6.9e-10 68.6 191 37.2
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 1.2e-09 67.8 158 38.6
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.0e-09 67.0 64 54.7
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 3.4e-09 66.2 92 40.2
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 3.4e-09 66.2 72 55.6
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 4.5e-09 65.9 66 54.5
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 7.7e-09 65.1 176 35.2
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 1.0e-08 64.7 58 55.2
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.0e-08 64.7 46 63.0
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.3e-08 64.3 61 52.5
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 1.3e-08 64.3 193 35.2
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 1.3e-08 64.3 170 35.9
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 1.3e-08 64.3 170 35.9
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.3e-08 64.3 160 36.9
arahy.Tifrunner.gnm1.ann1.6P54CG Arachis hypogaea HOM05D001903 ORTHO05D001847 1.7e-08 63.9 80 46.2
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 1.7e-08 63.9 159 37.7
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.7e-08 63.9 190 34.2
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 2.2e-08 63.5 107 39.3
COL.COLO4_24106 Corchorus olitorius HOM05D031544 ORTHO05D007768 2.2e-08 63.5 42 66.7
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.9e-08 63.2 61 52.5
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 3.8e-08 62.8 174 32.8
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.8e-08 62.8 204 35.3
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.8e-08 62.8 105 40.0
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 3.8e-08 62.8 176 34.7
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 3.8e-08 62.8 100 37.0
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 5.0e-08 62.4 183 35.5
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 5.0e-08 62.4 211 34.1
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 6.5e-08 62.0 96 42.7
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 6.5e-08 62.0 188 31.9
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 6.5e-08 62.0 65 49.2
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 6.5e-08 62.0 90 41.1
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 6.5e-08 62.0 62 50.0
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 8.5e-08 61.6 104 41.3
Eucgr.C02775 Eucalyptus grandis HOM05D001903 ORTHO05D001847 1.1e-07 61.2 101 37.6
Nn4g23899 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.1e-07 61.2 52 59.6
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 1.1e-07 61.2 68 50.0
Sc08g0006520 Simmondsia chinensis HOM05D001903 ORTHO05D001847 1.1e-07 61.2 55 52.7
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.4e-07 60.8 103 39.8
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 1.4e-07 60.8 197 34.5
Sp5g35670 Schrenkiella parvula HOM05D001903 ORTHO05D001847 1.4e-07 60.8 113 38.1
A07p45380 Brassica napus HOM05D001903 ORTHO05D001847 1.9e-07 60.5 92 42.4
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 1.9e-07 60.5 64 50.0
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 1.9e-07 60.5 59 52.5
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 2.5e-07 60.1 75 48.0
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 2.5e-07 60.1 107 43.9
Actinidia26389 Actinidia chinensis HOM05D001903 ORTHO05D001847 3.2e-07 59.7 65 50.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.2e-07 59.7 71 43.7
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 3.2e-07 59.7 76 51.3
Carub.0002s2739 Capsella rubella HOM05D001903 ORTHO05D001847 3.2e-07 59.7 91 42.9
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 3.2e-07 59.7 178 33.1
Duzib150G0453 Durio zibethinus HOM05D001903 ORTHO05D001847 3.2e-07 59.7 73 50.7
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 3.2e-07 59.7 171 34.5
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 3.2e-07 59.7 52 53.8
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 3.2e-07 59.7 107 44.9
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.2e-07 59.7 48 60.4
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 3.2e-07 59.7 190 34.7
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 4.2e-07 59.3 62 50.0
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 4.2e-07 59.3 62 50.0
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 4.2e-07 59.3 199 34.7
Gohir.A07G028000 Gossypium hirsutum HOM05D001903 ORTHO05D001847 4.2e-07 59.3 162 32.7
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 5.5e-07 58.9 62 50.0
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 5.5e-07 58.9 173 37.0
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 5.5e-07 58.9 62 50.0
Manes.06G057500 Manihot esculenta HOM05D001903 ORTHO05D001847 5.5e-07 58.9 69 47.8
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 5.5e-07 58.9 77 45.5
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 7.2e-07 58.5 174 31.0
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 7.2e-07 58.5 163 37.4
Cc06_g08340 Coffea canephora HOM05D001903 ORTHO05D001847 7.2e-07 58.5 75 49.3
Lalb_Chr13g0301771 Lupinus albus HOM05D001903 ORTHO05D001847 7.2e-07 58.5 108 40.7
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 7.2e-07 58.5 218 29.8
A10p19730 Brassica napus HOM05D001903 ORTHO05D001847 9.4e-07 58.2 85 42.4
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 9.4e-07 58.2 159 35.8
BolC2t09769H Brassica oleracea HOM05D001903 ORTHO05D001847 9.4e-07 58.2 88 42.0
Ca_21670_v3 Cicer arietinum L. HOM05D001903 ORTHO05D001847 9.4e-07 58.2 123 39.8
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 9.4e-07 58.2 186 33.9
AL6G31750 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 1.2e-06 57.8 61 47.5
C03p11500 Brassica napus HOM05D001903 ORTHO05D001847 1.2e-06 57.8 70 45.7
CARHR192630 Cardamine hirsuta HOM05D001903 ORTHO05D001847 1.2e-06 57.8 72 48.6
CDE04G0657 Ceratophyllum demersum HOM05D001903 ORTHO05D001847 1.2e-06 57.8 161 34.8
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.2e-06 57.8 168 35.7
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 1.6e-06 57.4 90 40.0
A02p23820 Brassica napus HOM05D001903 ORTHO05D001847 1.6e-06 57.4 99 41.4
BraA02t07373Z Brassica rapa HOM05D001903 ORTHO05D001847 1.6e-06 57.4 99 41.4
Solyc06g068130.3 Solanum lycopersicum HOM05D001903 ORTHO05D001847 1.6e-06 57.4 87 46.0
BcaC03g16002 Brassica carinata HOM05D001903 ORTHO05D001847 2.1e-06 57.0 88 40.9
C02p37590 Brassica napus HOM05D001903 ORTHO05D001847 2.1e-06 57.0 88 42.0
Sed0022395 Sechium edule HOM05D001903 ORTHO05D001847 2.1e-06 57.0 56 51.8
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.7e-06 56.6 198 33.3
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 2.7e-06 56.6 77 40.3
Sp6g24210 Schrenkiella parvula HOM05D001903 ORTHO05D001847 2.7e-06 56.6 75 45.3
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 3.6e-06 56.2 167 32.9
BcaB05g22864 Brassica carinata HOM05D001903 ORTHO05D001847 3.6e-06 56.2 72 44.4
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 3.6e-06 56.2 60 48.3
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 3.6e-06 56.2 136 36.0
Gohir.D05G016700 Gossypium hirsutum HOM05D001903 ORTHO05D001847 3.6e-06 56.2 42 61.9
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.6e-06 56.2 211 31.8
Lj4g0003692 Lotus japonicus HOM05D001903 ORTHO05D001847 3.6e-06 56.2 51 52.9
THA.LOC104803660 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 3.6e-06 56.2 86 43.0
Aa31LG1G14000 Aethionema arabicum HOM05D001903 ORTHO05D001847 4.7e-06 55.8 95 43.2
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 4.7e-06 55.8 194 32.5
AUR62018697 Chenopodium quinoa HOM05D006310 ORTHO05D007768 4.7e-06 55.8 40 65.0
MELO3C010333.2 Cucumis melo HOM05D001903 ORTHO05D001847 4.7e-06 55.8 68 48.5
CsaV3_1G030300 Cucumis sativus L. HOM05D001903 ORTHO05D001847 4.7e-06 55.8 68 48.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 4.7e-06 55.8 58 51.7
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.7e-06 55.8 184 32.1
MBI04_g29347_MAGBIO Magnolia biondii HOM05D001903 ORTHO05D001847 4.7e-06 55.8 42 61.9
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 4.7e-06 55.8 87 42.5
ClCG06G011260 Citrullus lanatus HOM05D001903 ORTHO05D001847 6.1e-06 55.5 56 50.0
Ciclev10009189m.g Citrus clementina HOM05D001903 ORTHO05D001847 6.1e-06 55.5 65 46.2
ECA240G4176 Erigeron canadensis HOM05D001903 ORTHO05D001847 6.1e-06 55.5 74 44.6
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 6.1e-06 55.5 83 43.4
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.1e-06 55.5 163 33.1
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 6.1e-06 55.5 174 34.5
Gohir.A05G015600 Gossypium hirsutum HOM05D001903 ORTHO05D001847 6.1e-06 55.5 62 48.4
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 6.1e-06 55.5 183 32.8
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 6.1e-06 55.5 77 39.0
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 6.1e-06 55.5 140 34.3
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.9e-06 55.1 130 39.2
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 7.9e-06 55.1 64 48.4
MD15G1171400 Malus domestica HOM05D001903 ORTHO05D001847 7.9e-06 55.1 48 52.1
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 7.9e-06 55.1 67 41.8


User provided reference genes

Program Settings