Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09263 Striga asiatica HOM05D006211 ORTHO05D007202 5.0e-64 247.7 129 100.0
SGA_v2.0_scaffold6G03154 Striga asiatica HOM05D006211 ORTHO05D007202 4.8e-35 151.4 140 66.4
MSTRG.1998 Avicennia marina HOM05D006211 ORTHO05D007202 4.0e-21 105.1 161 47.2
Lj8A306T66 Lonicera japonica HOM05D006211 ORTHO05D007202 5.9e-17 91.3 162 44.4
Oeu019228.1 Olea europaea HOM05D006211 ORTHO05D007202 5.0e-16 88.2 146 42.5
Oeu028870.1 Olea europaea HOM05D006211 ORTHO05D007202 5.0e-16 88.2 146 42.5
Hma1.2p1_1594F.1_g292720 Hydrangea macrophylla HOM05D006211 ORTHO05D007202 6.2e-14 81.3 156 41.0
Migut.E00776 Erythranthe guttata HOM05D006211 ORTHO05D007202 8.0e-14 80.9 166 38.6
Actinidia03352 Actinidia chinensis HOM05D006211 ORTHO05D007202 1.1e-13 80.5 152 40.1
Dinv28989 Davidia involucrata HOM05D006211 ORTHO05D007202 1.1e-13 80.5 156 39.1
Dinv25246 Davidia involucrata HOM05D006211 ORTHO05D007202 6.8e-13 77.8 157 38.2
vmacro00294 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 6.8e-13 77.8 148 37.2
Rhsim11G0019700 Rhododendron simsii HOM05D006211 ORTHO05D007202 8.9e-13 77.4 158 38.6
Peaxi162Scf00170g00822 Petunia axillaris HOM05D006211 ORTHO05D007202 2.0e-12 76.3 157 38.9
vmacro00301 Vaccinium macrocarpon HOM05D006211 ORTHO05D007202 4.4e-12 75.1 148 36.5
Gohir.A08G154500 Gossypium hirsutum HOM05D006211 ORTHO05D007202 2.2e-11 72.8 154 37.7
Nn1g00185 Nelumbo nucifera HOM05D006211 ORTHO05D007202 2.2e-11 72.8 154 37.7
Potri.001G138300 Populus trichocarpa HOM05D006211 ORTHO05D007202 2.2e-11 72.8 161 39.1
Duzib084G0219 Durio zibethinus HOM05D006211 ORTHO05D007202 4.9e-11 71.6 156 35.3
Lsat_1_v5_gn_6_3501 Lactuca sativa HOM05D006211 ORTHO05D007202 8.3e-11 70.9 165 37.0
MSTRG.13745 Avicennia marina HOM05D006211 ORTHO05D007202 1.1e-10 70.5 95 49.5
PGR042G2947 Punica granatum HOM05D006211 ORTHO05D007202 1.1e-10 70.5 164 34.8
Thecc.03G308400 Theobroma cacao HOM05D006211 ORTHO05D007202 1.9e-10 69.7 157 35.7
CANSAT21G1179 Cannabis sativa HOM05D006211 ORTHO05D007202 2.4e-10 69.3 165 38.2
Gorai.004G183000 Gossypium raimondii HOM05D006211 ORTHO05D007202 2.4e-10 69.3 154 37.7
Sc22g0001800 Simmondsia chinensis HOM05D006211 ORTHO05D007202 2.4e-10 69.3 158 37.3
Solyc08g076520.3 Solanum lycopersicum HOM05D006211 ORTHO05D007202 2.4e-10 69.3 169 38.5
PGSC0003DMG400014798 Solanum tuberosum HOM05D006211 ORTHO05D007202 2.4e-10 69.3 168 39.3
CiPaw.12G067200 Carya illinoinensis HOM05D006211 ORTHO05D007202 4.1e-10 68.6 156 35.3
Gohir.D08G175100 Gossypium hirsutum HOM05D006211 ORTHO05D007202 4.1e-10 68.6 151 36.4
Potri.003G095500 Populus trichocarpa HOM05D006211 ORTHO05D007202 4.1e-10 68.6 171 36.3
Sabra01G0107000 Salix brachista HOM05D006211 ORTHO05D007202 4.1e-10 68.6 156 35.9
Hund14362 Selenicereus undatus HOM05D006211 ORTHO05D007202 4.1e-10 68.6 154 37.7
RcHm_v2.0_Chr7g0211581 Rosa chinensis HOM05D006211 ORTHO05D007202 5.4e-10 68.2 164 38.4
CiPaw.11G097200 Carya illinoinensis HOM05D006211 ORTHO05D007202 7.0e-10 67.8 153 36.6
Haze_08174 Corylus avellana HOM05D006211 ORTHO05D007202 7.0e-10 67.8 156 35.3
Sopen08g025100 Solanum pennellii HOM05D006211 ORTHO05D007202 7.0e-10 67.8 169 37.9
Actinidia06373 Actinidia chinensis HOM05D006211 ORTHO05D007202 9.2e-10 67.4 95 48.4
Nitab4.5_0000127g0020 Nicotiana tabacum HOM05D006211 ORTHO05D007202 1.2e-09 67.0 164 34.8
DCAR_008238 Daucus carota HOM05D006211 ORTHO05D007202 1.6e-09 66.6 156 34.6
Sabra03G0064400 Salix brachista HOM05D006211 ORTHO05D007202 1.6e-09 66.6 171 37.4
EL10Ac5g12029 Beta vulgaris HOM05D006211 ORTHO05D007202 2.0e-09 66.2 156 35.9
Duzib205G0699 Durio zibethinus HOM05D006211 ORTHO05D007202 3.5e-09 65.5 160 36.2
TWI60G1252 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 4.6e-09 65.1 159 34.6
Nitab4.5_0000529g0100 Nicotiana tabacum HOM05D006211 ORTHO05D007202 6.0e-09 64.7 166 33.7
Cpa.g.sc90.12 Carica papaya HOM05D006211 ORTHO05D007202 7.8e-09 64.3 163 38.0
COL.COLO4_16960 Corchorus olitorius HOM05D006211 ORTHO05D007202 7.8e-09 64.3 171 35.7
ECA233G1983 Erigeron canadensis HOM05D006211 ORTHO05D007202 7.8e-09 64.3 154 35.7
Prupe.5G029800 Prunus persica HOM05D006211 ORTHO05D007202 7.8e-09 64.3 171 35.1
QL12p001245 Quercus lobata HOM05D006211 ORTHO05D007202 7.8e-09 64.3 157 35.0
Cfa012495 Carpinus fangiana HOM05D006211 ORTHO05D007202 1.0e-08 63.9 157 31.8
arahy.Tifrunner.gnm1.ann1.Q6MSMD Arachis hypogaea HOM05D006211 ORTHO05D007202 1.7e-08 63.2 153 34.6
arahy.Tifrunner.gnm1.ann1.USP5IX Arachis hypogaea HOM05D006211 ORTHO05D007202 1.7e-08 63.2 153 34.6
FvH4_5g22880 Fragaria vesca HOM05D006211 ORTHO05D007202 1.7e-08 63.2 164 35.4
FAN18G0589 Fragaria x ananassa HOM05D006211 ORTHO05D007202 1.7e-08 63.2 164 35.4
FAN18G2302 Fragaria x ananassa HOM05D006211 ORTHO05D007202 1.7e-08 63.2 164 35.4
Manes.17G010400 Manihot esculenta HOM05D006211 ORTHO05D007202 1.7e-08 63.2 93 40.9
ClCG09G011720 Citrullus lanatus HOM05D006211 ORTHO05D007202 2.3e-08 62.8 159 34.6
FAN08G1932 Fragaria x ananassa HOM05D006211 ORTHO05D007202 2.3e-08 62.8 161 34.8
TWI81G0656 Tripterygium wilfordii HOM05D006211 ORTHO05D007202 2.3e-08 62.8 161 36.6
AL4G31520 Arabidopsis lyrata HOM05D006211 ORTHO05D007202 3.0e-08 62.4 167 36.5
Hund11197 Selenicereus undatus HOM05D006211 ORTHO05D007202 3.9e-08 62.0 156 34.0
Gohir.A03G000042 Gossypium hirsutum HOM05D006211 ORTHO05D007202 5.0e-08 61.6 137 37.2
Ah.12g055390 Amaranthus hybridus HOM05D006211 ORTHO05D007202 1.1e-07 60.5 156 35.3
Lalb_Chr09g0325551 Lupinus albus HOM05D006211 ORTHO05D007202 1.1e-07 60.5 148 33.8
Sed0013517 Sechium edule HOM05D006211 ORTHO05D007202 1.5e-07 60.1 158 33.5
Glyma.01G015400 Glycine max HOM05D006211 ORTHO05D007202 2.5e-07 59.3 159 33.3
AUR62018657 Chenopodium quinoa HOM05D006211 ORTHO05D007202 3.3e-07 58.9 154 33.1
Lalb_Chr05g0215821 Lupinus albus HOM05D006211 ORTHO05D007202 3.3e-07 58.9 151 33.1
VMungo1215G0299 Vigna mungo HOM05D006211 ORTHO05D007202 3.3e-07 58.9 153 31.4
A05p10260 Brassica napus HOM05D006211 ORTHO05D007202 4.3e-07 58.5 163 35.0
BraA05t19966Z Brassica rapa HOM05D006211 ORTHO05D007202 4.3e-07 58.5 163 35.0
Glyma.09G207000 Glycine max HOM05D006211 ORTHO05D007202 4.3e-07 58.5 153 31.4
Ca_25191_v3 Cicer arietinum L. HOM05D006211 ORTHO05D007202 5.6e-07 58.2 153 34.0
Ciclev10002672m.g Citrus clementina HOM05D006211 ORTHO05D007202 5.6e-07 58.2 95 41.1
FAN04G1558 Fragaria x ananassa HOM05D006211 ORTHO05D007202 5.6e-07 58.2 166 31.9
Lalb_Chr16g0381161 Lupinus albus HOM05D006211 ORTHO05D007202 5.6e-07 58.2 152 32.9
Atru.chr6.1617 Acer truncatum HOM05D006211 ORTHO05D007202 7.3e-07 57.8 155 34.2
AT2G35470 Arabidopsis thaliana HOM05D006211 ORTHO05D007202 7.3e-07 57.8 169 34.9
CARHR129620 Cardamine hirsuta HOM05D006211 ORTHO05D007202 7.3e-07 57.8 168 34.5
Phvul.002G138000 Phaseolus vulgaris HOM05D006211 ORTHO05D007202 7.3e-07 57.8 153 30.7
Carub.0004s1716 Capsella rubella HOM05D006211 ORTHO05D007202 1.2e-06 57.0 171 33.3
Cc08_g03420 Coffea canephora HOM05D006211 ORTHO05D007202 1.2e-06 57.0 95 37.9
HanXRQChr02g0049381 Helianthus annuus HOM05D006211 ORTHO05D007202 1.2e-06 57.0 127 37.8
MD06G1025300 Malus domestica HOM05D006211 ORTHO05D007202 1.2e-06 57.0 118 39.0
MD16G1281100 Malus domestica HOM05D006211 ORTHO05D007202 1.2e-06 57.0 118 39.0
Sed0017013 Sechium edule HOM05D006211 ORTHO05D007202 1.6e-06 56.6 155 32.9
Thhalv10017330m.g Eutrema salsugineum HOM05D006211 ORTHO05D007202 2.1e-06 56.2 168 33.9
BolC4t27918H Brassica oleracea HOM05D006211 ORTHO05D007202 2.8e-06 55.8 155 32.9
BcaC02g11652 Brassica carinata HOM05D006211 ORTHO05D007202 3.6e-06 55.5 167 34.1
BolC4t22919H Brassica oleracea HOM05D006211 ORTHO05D007202 3.6e-06 55.5 167 34.1
Eucgr.E00236 Eucalyptus grandis HOM05D006211 ORTHO05D007202 4.7e-06 55.1 92 40.2
TPR.G8109 Trifolium pratense HOM05D006211 ORTHO05D007202 4.7e-06 55.1 149 32.2
Gohir.D03G175400 Gossypium hirsutum HOM05D006211 ORTHO05D007202 8.1e-06 54.3 152 32.9
Gorai.003G184400 Gossypium raimondii HOM05D006211 ORTHO05D007202 8.1e-06 54.3 152 32.9
Zm00001eb024710 Zea mays HOM05D065542 ORTHO05D051638 8.1e-06 54.3 85 44.7


User provided reference genes

Program Settings