Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 3.7e-114 414.8 202 100.0
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 4.4e-67 258.5 203 65.0
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.1e-65 253.8 206 69.9
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 7.0e-65 251.1 199 66.8
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 9.2e-65 250.8 256 54.7
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 2.5e-62 242.7 202 60.4
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.1e-60 237.3 202 59.9
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 8.9e-60 234.2 202 59.9
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.0e-59 233.0 204 60.3
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 7.5e-59 231.1 200 58.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 7.5e-59 231.1 202 59.4
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.7e-58 229.9 206 57.8
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 3.2e-57 225.7 206 57.3
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 4.1e-57 225.3 202 55.9
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-56 223.4 203 56.7
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.3e-55 220.3 201 56.2
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.7e-55 219.9 202 55.9
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.7e-55 219.9 202 55.9
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 3.0e-55 219.2 204 56.9
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 6.6e-55 218.0 198 56.1
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 6.6e-55 218.0 202 57.4
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.1e-54 217.2 207 58.5
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.1e-54 217.2 202 54.5
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 2.5e-54 216.1 204 56.4
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 5.6e-54 214.9 199 57.8
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 7.3e-54 214.5 205 56.6
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 9.5e-54 214.2 204 54.4
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.1e-53 213.0 202 53.5
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.1e-53 213.0 199 53.8
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.1e-52 210.7 221 52.5
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.4e-52 210.3 206 52.4
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.8e-52 209.9 201 52.7
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 2.3e-52 209.5 199 54.3
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.3e-52 209.5 201 53.2
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 4.0e-52 208.8 202 55.9
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.2e-52 208.4 203 52.7
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 5.2e-52 208.4 199 54.8
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.5e-51 206.8 202 55.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.0e-51 206.5 207 53.6
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.0e-51 206.5 204 52.9
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 2.0e-51 206.5 198 57.1
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 2.0e-51 206.5 198 57.1
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.0e-51 206.5 206 52.4
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 2.6e-51 206.1 207 55.1
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.6e-51 206.1 207 54.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.4e-51 205.7 203 52.2
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.8e-51 204.9 212 53.3
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.6e-51 204.5 203 52.7
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.6e-51 204.5 203 52.2
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 9.9e-51 204.1 212 51.9
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 9.9e-51 204.1 200 52.0
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.7e-50 203.4 202 55.0
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.2e-50 203.0 199 53.8
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.2e-50 203.0 203 52.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 3.7e-50 202.2 202 54.0
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 6.4e-50 201.4 203 54.2
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 6.4e-50 201.4 210 51.0
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 8.3e-50 201.1 210 52.9
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 8.3e-50 201.1 200 54.0
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.4e-49 200.3 199 52.3
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.4e-49 199.5 203 51.2
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.4e-49 199.5 204 55.4
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.2e-49 199.1 202 53.0
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 4.1e-49 198.7 198 50.0
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 5.4e-49 198.4 199 49.7
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 7.1e-49 198.0 202 55.4
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 9.2e-49 197.6 209 52.2
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.2e-48 197.2 204 50.0
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.7e-48 196.1 180 60.0
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 3.5e-48 195.7 203 49.8
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 4.6e-48 195.3 204 53.4
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 4.6e-48 195.3 200 53.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.8e-48 194.5 200 51.5
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.0e-47 194.1 202 53.0
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.0e-47 194.1 202 53.0
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.3e-47 193.7 202 53.5
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-47 193.7 203 51.2
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.3e-47 193.7 199 50.3
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.7e-47 193.4 209 53.1
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 6.6e-47 191.4 203 50.7
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 6.6e-47 191.4 198 51.5
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 6.6e-47 191.4 200 51.0
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 8.6e-47 191.0 204 50.5
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 8.6e-47 191.0 204 50.5
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-46 189.9 205 49.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.9e-46 189.9 187 53.5
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.5e-46 189.5 209 52.6
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.5e-46 189.5 273 42.1
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 5.6e-46 188.3 204 50.0
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 5.6e-46 188.3 198 50.5
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 9.6e-46 187.6 205 50.7
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 9.6e-46 187.6 205 50.7
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.6e-45 186.8 188 55.3
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.6e-45 186.8 202 48.0
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.1e-45 186.4 206 46.6
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 3.6e-45 185.7 202 48.5
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.7e-45 185.3 200 50.5
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 6.2e-45 184.9 203 47.8
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 8.1e-45 184.5 202 50.5
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.4e-44 183.7 200 49.5
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.2e-43 180.6 204 48.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.6e-43 179.5 211 48.3
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 3.4e-43 179.1 198 51.0
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 5.8e-43 178.3 216 50.5
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 7.6e-43 177.9 202 49.0
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.7e-42 176.8 206 45.6
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.8e-42 175.6 203 46.3
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 3.8e-42 175.6 212 45.3
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.8e-42 175.6 201 46.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.8e-42 175.6 187 53.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 6.4e-42 174.9 201 48.3
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 8.4e-42 174.5 158 60.1
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 8.4e-42 174.5 208 49.5
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-41 173.7 209 45.0
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.4e-41 173.7 200 45.5
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.9e-41 173.3 329 35.6
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.2e-41 172.6 176 55.7
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.2e-41 172.6 176 55.7
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 5.4e-41 171.8 219 46.6
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 7.1e-41 171.4 205 45.4
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 7.1e-41 171.4 205 45.4
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 7.1e-41 171.4 205 45.4
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.2e-40 170.6 200 45.5
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.6e-40 170.2 198 49.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 2.1e-40 169.9 177 52.5
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.7e-40 169.5 203 46.8
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.6e-40 168.7 203 46.8
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 2.3e-39 166.4 204 46.1
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 2.3e-39 166.4 204 46.1
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 8.7e-39 164.5 202 45.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.9e-38 163.3 203 46.3
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.6e-37 159.1 116 68.1
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 4.8e-37 158.7 160 53.8
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 1.8e-36 156.8 198 43.4
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 4.4e-35 152.1 200 43.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 6.4e-34 148.3 156 49.4
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 2.4e-33 146.4 110 65.5
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 4.2e-33 145.6 201 41.8
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.6e-32 143.7 105 65.7
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.6e-32 143.7 94 74.5
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.1e-32 143.3 201 42.3
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.1e-30 137.5 108 62.0
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.5e-30 136.3 90 71.1
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 4.3e-30 135.6 167 46.7
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 2.1e-29 133.3 199 41.7
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.2e-27 127.5 179 43.0
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 5.8e-27 125.2 100 59.0
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 7.6e-27 124.8 131 51.1
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.3e-26 124.0 158 43.7
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.7e-26 123.6 157 43.3
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 7.1e-25 118.2 148 44.6
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 2.1e-24 116.7 148 42.6
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.5e-24 115.9 154 42.2
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 7.9e-24 114.8 200 36.5
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.8e-21 106.3 160 38.8
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.4e-20 103.2 133 43.6
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.3e-20 102.1 120 43.3
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 7.1e-17 91.7 157 38.9
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.1e-16 90.1 73 63.0
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.3e-13 80.9 104 43.3
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.8e-12 77.0 44 81.8
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.8e-12 77.0 44 81.8
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 2.4e-12 76.6 46 76.1
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.4e-12 76.6 64 62.5
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 1.0e-10 71.2 52 59.6
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 2.2e-10 70.1 155 36.8
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 2.9e-10 69.7 79 46.8
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.5e-09 66.6 130 36.9
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 2.7e-08 63.2 69 36.2
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 5.1e-07 58.9 91 39.6


User provided reference genes

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