Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09189 Striga asiatica HOM05D016586 ORTHO05D004968 1.8e-123 446.0 246 100.0
SGA_v2.0_scaffold157G37396 Striga asiatica HOM05D002086 ORTHO05D004968 8.7e-17 91.7 82 74.4
SGA_v2.0_scaffold52G19084 Striga asiatica HOM05D016586 ORTHO05D400185 9.6e-16 88.2 76 68.4
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 6.2e-15 85.5 59 79.7
SGA_v2.0_scaffold52G19079 Striga asiatica HOM05D016586 ORTHO05D400521 8.1e-15 85.1 59 79.7
SGA_v2.0_scaffold52G19088 Striga asiatica HOM05D016586 ORTHO05D406419 3.8e-12 76.3 77 61.0
SGA_v2.0_scaffold52G19086 Striga asiatica HOM05D016586 ORTHO05D404120 4.9e-12 75.9 56 80.4
SGA_v2.0_scaffold52G19093 Striga asiatica HOM05D016586 ORTHO05D403038 4.9e-12 75.9 56 80.4
EL10Ac2g04129 Beta vulgaris HOM05D002086 ORTHO05D004968 1.8e-09 67.4 43 76.7
AUR62012467 Chenopodium quinoa HOM05D002086 ORTHO05D004968 6.7e-09 65.5 84 53.6
CARHR239820 Cardamine hirsuta HOM05D002086 ORTHO05D004968 8.7e-09 65.1 43 72.1
Atru.chr7.2533 Acer truncatum HOM05D002086 ORTHO05D004968 1.1e-08 64.7 43 74.4
Ah.16g104970 Amaranthus hybridus HOM05D002086 ORTHO05D004968 1.1e-08 64.7 41 78.0
AL7G20050 Arabidopsis lyrata HOM05D002086 ORTHO05D004968 1.1e-08 64.7 43 72.1
AT4G31890 Arabidopsis thaliana HOM05D002086 ORTHO05D004968 1.1e-08 64.7 43 72.1
Ciclev10008009m.g Citrus clementina HOM05D002086 ORTHO05D004968 1.1e-08 64.7 70 52.9
Gohir.A05G058300 Gossypium hirsutum HOM05D002086 ORTHO05D004968 1.1e-08 64.7 69 52.2
Gohir.D05G060300 Gossypium hirsutum HOM05D002086 ORTHO05D004968 1.1e-08 64.7 69 52.2
Gorai.009G061400 Gossypium raimondii HOM05D002086 ORTHO05D004968 1.1e-08 64.7 69 52.2
Hund03461 Selenicereus undatus HOM05D002086 ORTHO05D004968 1.1e-08 64.7 43 72.1
Thhalv10024943m.g Eutrema salsugineum HOM05D002086 ORTHO05D004968 1.5e-08 64.3 43 72.1
Sc09g0010520 Simmondsia chinensis HOM05D002086 ORTHO05D004968 1.5e-08 64.3 41 78.0
Actinidia13192 Actinidia chinensis HOM05D002086 ORTHO05D004968 2.5e-08 63.5 41 75.6
Cpa.g.sc127.18 Carica papaya HOM05D002086 ORTHO05D004968 2.5e-08 63.5 83 49.4
CDE05G1030 Ceratophyllum demersum HOM05D002086 ORTHO05D004968 2.5e-08 63.5 41 78.0
ClCG08G013670 Citrullus lanatus HOM05D002086 ORTHO05D004968 2.5e-08 63.5 69 49.3
Eucgr.C02665 Eucalyptus grandis HOM05D002086 ORTHO05D004968 2.5e-08 63.5 41 75.6
Lsat_1_v5_gn_6_77701 Lactuca sativa HOM05D002086 ORTHO05D004968 2.5e-08 63.5 41 73.2
Carub.0007s0865 Capsella rubella HOM05D002086 ORTHO05D004968 3.3e-08 63.2 43 69.8
Cfa013073 Carpinus fangiana HOM05D002086 ORTHO05D004968 3.3e-08 63.2 41 75.6
Haze_21431 Corylus avellana HOM05D002086 ORTHO05D004968 3.3e-08 63.2 41 75.6
FAN20G1050 Fragaria x ananassa HOM05D002086 ORTHO05D004968 3.3e-08 63.2 43 69.8
vmacro11259 Vaccinium macrocarpon HOM05D002086 ORTHO05D004968 3.3e-08 63.2 40 75.0
GSVIVG01035894001 Vitis vinifera HOM05D002086 ORTHO05D004968 3.3e-08 63.2 41 75.6
AUR62031593 Chenopodium quinoa HOM05D002086 ORTHO05D004968 4.3e-08 62.8 84 52.4
Duzib187G0822 Durio zibethinus HOM05D002086 ORTHO05D004968 4.3e-08 62.8 41 75.6
Gorai.010G118100 Gossypium raimondii HOM05D002086 ORTHO05D004968 4.3e-08 62.8 65 55.4
Hund19595 Selenicereus undatus HOM05D002086 ORTHO05D004968 4.3e-08 62.8 89 44.9
Thecc.09G017200 Theobroma cacao HOM05D002086 ORTHO05D004968 4.3e-08 62.8 41 75.6
BcaC09g51980 Brassica carinata HOM05D002086 ORTHO05D004968 5.6e-08 62.4 43 69.8
BcaNung03121 Brassica carinata HOM05D002086 ORTHO05D004968 5.6e-08 62.4 43 69.8
A01p06360 Brassica napus HOM05D002086 ORTHO05D004968 5.6e-08 62.4 43 69.8
C01p07010 Brassica napus HOM05D002086 ORTHO05D004968 5.6e-08 62.4 43 69.8
BraA01t00601Z Brassica rapa HOM05D002086 ORTHO05D004968 5.6e-08 62.4 43 69.8
Manes.03G010200 Manihot esculenta HOM05D002086 ORTHO05D004968 5.6e-08 62.4 41 75.6
Manes.16G128100 Manihot esculenta HOM05D002086 ORTHO05D004968 5.6e-08 62.4 84 50.0
Sp7g29710 Schrenkiella parvula HOM05D002086 ORTHO05D004968 5.6e-08 62.4 43 69.8
CiPaw.07G228900 Carya illinoinensis HOM05D002086 ORTHO05D004968 7.4e-08 62.0 41 73.2
Dinv16456 Davidia involucrata HOM05D002086 ORTHO05D004968 7.4e-08 62.0 41 73.2
Gohir.D06G103100 Gossypium hirsutum HOM05D002086 ORTHO05D004968 7.4e-08 62.0 65 55.4
Prupe.1G392300 Prunus persica HOM05D002086 ORTHO05D004968 7.4e-08 62.0 41 73.2
CSS0012509 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 9.6e-08 61.6 41 73.2
CSS0033639 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 9.6e-08 61.6 41 73.2
DCAR_022852 Daucus carota HOM05D002086 ORTHO05D004968 9.6e-08 61.6 75 52.0
FvH4_2g40980 Fragaria vesca HOM05D002086 ORTHO05D004968 9.6e-08 61.6 43 67.4
FAN15G3214 Fragaria x ananassa HOM05D002086 ORTHO05D004968 9.6e-08 61.6 43 67.4
FAN27G1068 Fragaria x ananassa HOM05D002086 ORTHO05D004968 9.6e-08 61.6 43 67.4
Hma1.2p1_0059F.1_g032590 Hydrangea macrophylla HOM05D002086 ORTHO05D004968 9.6e-08 61.6 78 46.2
MD08G1057900 Malus domestica HOM05D002086 ORTHO05D004968 9.6e-08 61.6 41 70.7
Nitab4.5_0000486g0090 Nicotiana tabacum HOM05D002086 ORTHO05D004968 9.6e-08 61.6 41 73.2
Nitab4.5_0004637g0070 Nicotiana tabacum HOM05D002086 ORTHO05D004968 9.6e-08 61.6 41 73.2
QL02p019575 Quercus lobata HOM05D002086 ORTHO05D004968 9.6e-08 61.6 41 73.2
RcHm_v2.0_Chr6g0299591 Rosa chinensis HOM05D002086 ORTHO05D004968 9.6e-08 61.6 41 70.7
SalBow4G1182 Salvia bowleyana HOM05D002086 ORTHO05D004968 9.6e-08 61.6 41 73.2
Actinidia22300 Actinidia chinensis HOM05D002086 ORTHO05D004968 1.3e-07 61.2 41 73.2
Aa31LG2G18200 Aethionema arabicum HOM05D002086 ORTHO05D004968 1.3e-07 61.2 43 69.8
BolC1t00696H Brassica oleracea HOM05D002086 ORTHO05D004968 1.3e-07 61.2 43 67.4
Duzib168G2069 Durio zibethinus HOM05D002086 ORTHO05D004968 1.3e-07 61.2 41 73.2
ECA240G0466 Erigeron canadensis HOM05D002086 ORTHO05D004968 1.3e-07 61.2 41 70.7
Rhsim02G0215800 Rhododendron simsii HOM05D002086 ORTHO05D004968 1.3e-07 61.2 40 72.5
Sabra06G0205300 Salix brachista HOM05D002086 ORTHO05D004968 1.3e-07 61.2 84 47.6
Ah.10g035540 Amaranthus hybridus HOM05D002086 ORTHO05D004968 1.6e-07 60.8 41 73.2
Aqoxy5G00905 Aquilegia oxysepala HOM05D002086 ORTHO05D004968 1.6e-07 60.8 41 73.2
Gohir.A06G101100 Gossypium hirsutum HOM05D002086 ORTHO05D004968 1.6e-07 60.8 65 53.8
Lj8A736T34 Lonicera japonica HOM05D002086 ORTHO05D004968 1.6e-07 60.8 78 46.2
PGR044G1726 Punica granatum HOM05D002086 ORTHO05D004968 1.6e-07 60.8 71 46.5
Sed0000579 Sechium edule HOM05D002086 ORTHO05D004968 1.6e-07 60.8 41 73.2
MELO3C011293.2 Cucumis melo HOM05D002086 ORTHO05D004968 2.1e-07 60.5 41 73.2
MELO3C016971.2 Cucumis melo HOM05D002086 ORTHO05D004968 2.1e-07 60.5 41 70.7
CsaV3_2G032440 Cucumis sativus L. HOM05D002086 ORTHO05D004968 2.1e-07 60.5 41 73.2
CsaV3_4G036680 Cucumis sativus L. HOM05D002086 ORTHO05D004968 2.1e-07 60.5 41 70.7
Rhsim07G0163800 Rhododendron simsii HOM05D002086 ORTHO05D004968 2.1e-07 60.5 38 76.3
Sed0008437 Sechium edule HOM05D002086 ORTHO05D004968 2.1e-07 60.5 69 47.8
CSS0031585 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 2.8e-07 60.1 39 74.4
HanXRQChr03g0084921 Helianthus annuus HOM05D002086 ORTHO05D004968 2.8e-07 60.1 78 46.2
Dinv01596 Davidia involucrata HOM05D002086 ORTHO05D004968 3.7e-07 59.7 41 68.3
Dinv40991 Davidia involucrata HOM05D002086 ORTHO05D004968 3.7e-07 59.7 41 68.3
Lalb_Chr22g0361391 Lupinus albus HOM05D002086 ORTHO05D004968 3.7e-07 59.7 41 70.7
Lalb_Chr23g0268271 Lupinus albus HOM05D002086 ORTHO05D004968 3.7e-07 59.7 45 64.4
Potri.006G263100 Populus trichocarpa HOM05D002086 ORTHO05D004968 3.7e-07 59.7 92 44.6
Sed0019085 Sechium edule HOM05D002086 ORTHO05D004968 3.7e-07 59.7 69 47.8
Solyc08g042100.3 Solanum lycopersicum HOM05D002086 ORTHO05D004968 3.7e-07 59.7 39 74.4
Sopen08g012600 Solanum pennellii HOM05D002086 ORTHO05D004968 3.7e-07 59.7 39 74.4
PGSC0003DMG400000963 Solanum tuberosum HOM05D002086 ORTHO05D004968 3.7e-07 59.7 39 74.4
Actinidia23099 Actinidia chinensis HOM05D002086 ORTHO05D004968 4.8e-07 59.3 42 64.3
ClCG05G016420 Citrullus lanatus HOM05D002086 ORTHO05D004968 4.8e-07 59.3 82 43.9
TAR383G0088 Trochodendron aralioides HOM05D002086 ORTHO05D004968 4.8e-07 59.3 41 68.3
TAR626G0463 Trochodendron aralioides HOM05D002086 ORTHO05D004968 4.8e-07 59.3 41 68.3
vmacro05132 Vaccinium macrocarpon HOM05D002086 ORTHO05D004968 4.8e-07 59.3 43 72.1
Oeu000762.1 Olea europaea HOM05D002086 ORTHO05D004968 8.1e-07 58.5 42 69.0
Migut.E00553 Erythranthe guttata HOM05D002086 ORTHO05D004968 1.1e-06 58.2 74 58.1
PSO017G4449 Papaver somniferum HOM05D002086 ORTHO05D004968 1.1e-06 58.2 41 65.9
PSO170G0198 Papaver somniferum HOM05D002086 ORTHO05D004968 1.1e-06 58.2 39 69.2
CiPaw.08G006900 Carya illinoinensis HOM05D002086 ORTHO05D004968 1.4e-06 57.8 38 73.7
Oeu056782.2 Olea europaea HOM05D002086 ORTHO05D004968 1.4e-06 57.8 83 44.6
Oeu012644.1 Olea europaea HOM05D002086 ORTHO05D004968 1.8e-06 57.4 42 66.7
MD15G1038300 Malus domestica HOM05D002086 ORTHO05D004968 3.1e-06 56.6 36 75.0
Nn8g39828 Nelumbo nucifera HOM05D002086 ORTHO05D004968 3.1e-06 56.6 43 69.8
Phvul.001G045900 Phaseolus vulgaris HOM05D002086 ORTHO05D004968 3.1e-06 56.6 41 65.9
VMungo0647G1059 Vigna mungo HOM05D002086 ORTHO05D004968 3.1e-06 56.6 41 65.9
CARHR116540 Cardamine hirsuta HOM05D002086 ORTHO05D004968 5.3e-06 55.8 68 50.0
Ca_13056_v3 Cicer arietinum L. HOM05D002086 ORTHO05D004968 5.3e-06 55.8 41 65.9
TPR.G3098 Trifolium pratense HOM05D002086 ORTHO05D004968 5.3e-06 55.8 41 68.3
Actinidia14124 Actinidia chinensis HOM05D002086 ORTHO05D004968 6.9e-06 55.5 41 68.3
Thhalv10000153m.g Eutrema salsugineum HOM05D002086 ORTHO05D004968 6.9e-06 55.5 60 46.7
Phvul.009G088200 Phaseolus vulgaris HOM05D002086 ORTHO05D004968 6.9e-06 55.5 43 65.1
BcaB08g35154 Brassica carinata HOM05D002086 ORTHO05D004968 9.0e-06 55.1 37 73.0
Medtr3g106140 Medicago truncatula HOM05D002086 ORTHO05D004968 9.0e-06 55.1 41 68.3
Os09g0416900 Oryza sativa ssp. japonica HOM05D002086 ORTHO05D004968 9.0e-06 55.1 43 69.8


User provided reference genes

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