Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.3e-182 642.9 309 100.0
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 8.3e-174 613.6 309 95.1
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 2.4e-120 436.0 303 71.3
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 3.2e-109 399.1 267 70.8
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.8e-107 393.3 315 63.5
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.8e-104 383.3 295 62.7
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 5.8e-103 378.3 261 66.7
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 5.8e-103 378.3 304 61.8
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 7.1e-101 371.3 267 63.7
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.6e-97 360.1 267 63.7
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.4e-96 356.3 272 62.1
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 2.4e-96 356.3 240 70.0
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 3.1e-96 355.9 270 63.3
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.2e-95 354.0 261 64.4
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 1.5e-95 353.6 285 59.6
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 1.3e-94 350.5 284 59.5
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 1.3e-94 350.5 294 59.2
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 3.8e-94 349.0 296 58.8
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 2.3e-91 339.7 300 57.3
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.5e-90 336.3 278 59.4
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 5.7e-90 335.1 276 59.8
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 7.4e-90 334.7 295 58.0
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 2.8e-89 332.8 287 57.1
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.4e-88 330.5 289 57.4
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.2e-87 327.4 267 58.8
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.2e-87 327.4 270 58.9
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 3.4e-87 325.9 272 58.8
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 1.3e-86 323.9 266 59.8
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 1.3e-86 323.9 268 58.2
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 2.2e-86 323.2 308 55.2
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.8e-86 322.4 263 61.2
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.1e-85 320.9 269 61.0
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.4e-85 320.5 259 60.6
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 1.9e-85 320.1 276 56.2
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 5.5e-85 318.5 275 57.8
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.2e-84 317.4 379 47.2
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 1.6e-84 317.0 296 55.4
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 2.1e-84 316.6 266 58.3
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 2.7e-84 316.2 262 58.4
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 4.6e-84 315.5 296 55.1
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 4.6e-84 315.5 284 53.2
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 4.6e-84 315.5 275 56.0
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 3.9e-83 312.4 277 56.3
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-82 310.8 260 56.9
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.1e-82 310.8 292 54.5
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 3.3e-82 309.3 297 55.6
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 4.3e-82 308.9 267 57.3
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 7.4e-82 308.1 261 59.0
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 7.4e-82 308.1 298 51.3
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 9.7e-82 307.8 254 59.1
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.3e-81 307.4 261 57.9
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.7e-81 307.0 271 58.3
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 2.2e-81 306.6 297 55.2
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 3.7e-81 305.8 276 55.8
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-80 304.3 262 56.5
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-80 304.3 256 58.2
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.1e-80 304.3 256 58.2
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.1e-80 304.3 262 56.5
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 1.4e-80 303.9 261 57.1
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.4e-80 303.9 261 57.1
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.8e-80 303.5 286 54.5
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 2.4e-80 303.1 256 58.6
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 2.4e-80 303.1 263 57.0
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 2.4e-80 303.1 258 58.1
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 4.1e-80 302.4 271 55.4
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.2e-79 300.8 256 57.8
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.2e-79 300.8 308 50.3
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.2e-79 300.8 264 56.8
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.5e-79 300.4 268 56.0
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 5.9e-79 298.5 286 52.4
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 5.9e-79 298.5 308 50.6
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 7.7e-79 298.1 294 52.4
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.0e-78 297.7 269 56.1
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.2e-78 296.6 267 56.2
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 2.2e-78 296.6 295 52.5
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 2.9e-78 296.2 276 53.6
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 5.0e-78 295.4 244 58.6
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 5.0e-78 295.4 267 55.8
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 2.5e-77 293.1 260 55.0
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 3.2e-77 292.7 245 55.1
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 5.5e-77 292.0 271 55.0
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 9.4e-77 291.2 263 51.7
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 6.1e-76 288.5 271 53.5
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 6.1e-76 288.5 273 55.3
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 2.3e-75 286.6 259 52.5
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 3.9e-75 285.8 317 45.7
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.1e-74 284.3 322 46.0
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.0e-74 283.5 322 46.3
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 3.3e-74 282.7 264 55.3
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 5.7e-74 282.0 279 53.8
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 7.0e-72 275.0 288 46.9
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 7.0e-72 275.0 286 46.5
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 4.5e-71 272.3 290 50.3
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 3.8e-70 269.2 285 50.5
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 2.5e-69 266.5 269 50.9
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 4.2e-69 265.8 282 50.7
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 6.7e-67 258.5 235 52.8
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 3.3e-66 256.1 250 53.6
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 5.7e-66 255.4 223 57.0
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 3.7e-65 252.7 247 52.6
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 4.8e-65 252.3 214 58.4
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 2.2e-62 243.4 270 45.6
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.5e-61 240.7 195 59.0
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.2e-61 239.6 281 47.7
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.8e-57 226.5 266 45.9
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.8e-57 226.5 273 42.9
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 1.8e-56 223.8 255 43.5
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.8e-56 223.8 357 35.9
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 3.5e-55 219.5 313 38.3
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 5.9e-55 218.8 271 42.4
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.9e-54 216.5 214 50.9
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.9e-54 216.5 214 50.9
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.0e-51 206.5 214 49.5
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.0e-51 206.1 214 49.5
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 5.2e-51 205.7 196 53.1
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 1.1e-48 198.0 290 37.9
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 7.0e-48 195.3 217 47.5
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 3.0e-43 179.9 185 45.9
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.0e-42 177.2 244 39.3
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 1.7e-41 174.1 207 48.3
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 2.5e-37 160.2 281 34.2
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.2e-36 157.9 123 61.8
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 2.1e-36 157.1 171 46.8
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 5.8e-34 149.1 146 53.4
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.7e-33 147.5 467 27.2
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.7e-33 147.5 143 51.0
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 6.6e-30 135.6 381 27.8
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 1.2e-28 131.3 315 30.2
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 4.7e-28 129.4 137 49.6
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 6.8e-27 125.6 100 60.0
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.4e-24 117.1 83 66.3
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 3.2e-24 116.7 141 47.5
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 7.1e-24 115.5 140 43.6
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 9.2e-24 115.2 172 41.9
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 2.8e-20 103.6 53 77.4
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 8.1e-20 102.1 143 38.5
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.6e-18 95.5 57 71.9
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.2e-17 94.0 57 71.9
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.2e-16 90.1 99 46.5
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.2e-15 88.2 166 36.1
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.1e-15 87.4 195 34.9
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 1.7e-14 84.3 122 36.9
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.1e-08 65.1 38 63.2
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 6.0e-07 59.3 38 57.9
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 6.0e-07 59.3 38 57.9


User provided reference genes

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