Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09089 Striga asiatica HOM05D005406 ORTHO05D006599 1.9e-74 282.3 134 100.0
SalBow6G6486 Salvia bowleyana HOM05D005406 ORTHO05D006599 2.7e-28 129.0 79 78.5
Cpa.g.sc20.64 Carica papaya HOM05D005406 ORTHO05D006599 8.6e-27 124.0 81 70.4
MSTRG.5302 Avicennia marina HOM05D005406 ORTHO05D006599 3.3e-26 122.1 81 71.6
Ah.01g024310 Amaranthus hybridus HOM05D005406 ORTHO05D006599 5.6e-26 121.3 81 70.4
EL10Ac9g22145 Beta vulgaris HOM05D005406 ORTHO05D006599 5.6e-26 121.3 81 69.1
SalBow6G6746 Salvia bowleyana HOM05D005406 ORTHO05D006599 5.6e-26 121.3 81 72.8
Thecc.02G035200 Theobroma cacao HOM05D005406 ORTHO05D006599 5.6e-26 121.3 79 73.4
Potri.009G081500 Populus trichocarpa HOM05D005406 ORTHO05D006599 3.6e-25 118.6 79 69.6
CSS0000362 Camellia sinensis var. sinensis HOM05D005406 ORTHO05D006599 4.7e-25 118.2 81 70.4
CSS0039463 Camellia sinensis var. sinensis HOM05D005406 ORTHO05D006599 4.7e-25 118.2 81 70.4
CiPaw.05G025100 Carya illinoinensis HOM05D005406 ORTHO05D006599 6.2e-25 117.9 82 69.5
Sabra09G0063200 Salix brachista HOM05D005406 ORTHO05D006599 6.2e-25 117.9 79 68.4
Migut.B00502 Erythranthe guttata HOM05D005406 ORTHO05D006599 8.1e-25 117.5 81 66.7
Gohir.A01G179200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 8.1e-25 117.5 79 69.6
Gohir.D01G170000 Gossypium hirsutum HOM05D005406 ORTHO05D006599 8.1e-25 117.5 79 69.6
Gorai.002G211600 Gossypium raimondii HOM05D005406 ORTHO05D006599 8.1e-25 117.5 79 69.6
MSTRG.16653 Avicennia marina HOM05D005406 ORTHO05D006599 1.1e-24 117.1 79 70.9
Duzib248G0763 Durio zibethinus HOM05D005406 ORTHO05D006599 1.4e-24 116.7 85 64.7
Peaxi162Scf00299g00335 Petunia axillaris HOM05D005406 ORTHO05D006599 1.4e-24 116.7 81 67.9
Hund00407 Selenicereus undatus HOM05D005406 ORTHO05D006599 3.1e-24 115.5 79 68.4
Rhsim05G0094300 Rhododendron simsii HOM05D005406 ORTHO05D006599 6.8e-24 114.4 81 69.1
AUR62030902 Chenopodium quinoa HOM05D005406 ORTHO05D006599 8.9e-24 114.0 78 66.7
AUR62027061 Chenopodium quinoa HOM05D005406 ORTHO05D006599 1.2e-23 113.6 79 65.8
Manes.10G090700 Manihot esculenta HOM05D005406 ORTHO05D006599 1.2e-23 113.6 83 65.1
Duzib132G0847 Durio zibethinus HOM05D005406 ORTHO05D006599 2.6e-23 112.5 79 68.4
vmacro19583 Vaccinium macrocarpon HOM05D005406 ORTHO05D006599 2.6e-23 112.5 81 67.9
BraA06t26063Z Brassica rapa HOM05D005406 ORTHO05D006599 3.4e-23 112.1 80 67.5
Manes.07G049000 Manihot esculenta HOM05D005406 ORTHO05D006599 3.4e-23 112.1 84 66.7
COL.COLO4_17837 Corchorus olitorius HOM05D005406 ORTHO05D006599 4.4e-23 111.7 79 67.1
Lj9A341G45 Lonicera japonica HOM05D005406 ORTHO05D006599 5.8e-23 111.3 81 64.2
Thhalv10004273m.g Eutrema salsugineum HOM05D005406 ORTHO05D006599 9.8e-23 110.5 82 65.9
Oeu005736.1 Olea europaea HOM05D005406 ORTHO05D006599 1.3e-22 110.2 81 65.4
Actinidia28010 Actinidia chinensis HOM05D005406 ORTHO05D006599 1.7e-22 109.8 81 66.7
Hma1.2p1_0435F.1_g152460 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 1.7e-22 109.8 79 67.1
TAR625G1228 Trochodendron aralioides HOM05D005406 ORTHO05D006599 1.7e-22 109.8 79 67.1
TAR381G0409 Trochodendron aralioides HOM05D005406 ORTHO05D006599 2.2e-22 109.4 78 69.2
A06p31250 Brassica napus HOM05D005406 ORTHO05D006599 2.9e-22 109.0 80 66.2
CAN.G504.65 Capsicum annuum HOM05D005406 ORTHO05D006599 2.9e-22 109.0 81 67.9
Lsat_1_v5_gn_5_110661 Lactuca sativa HOM05D005406 ORTHO05D006599 2.9e-22 109.0 82 61.0
HanXRQChr10g0291291 Helianthus annuus HOM05D005406 ORTHO05D006599 3.7e-22 108.6 82 65.9
Eucgr.I02516 Eucalyptus grandis HOM05D005406 ORTHO05D006599 4.9e-22 108.2 81 65.4
Sp2g27590 Schrenkiella parvula HOM05D005406 ORTHO05D006599 4.9e-22 108.2 82 63.4
Nitab4.5_0005609g0080 Nicotiana tabacum HOM05D005406 ORTHO05D006599 1.1e-21 107.1 81 66.7
Sopen01g048840 Solanum pennellii HOM05D005406 ORTHO05D006599 1.1e-21 107.1 81 65.4
PGSC0003DMG400005102 Solanum tuberosum HOM05D005406 ORTHO05D006599 1.1e-21 107.1 81 65.4
CARHR278480 Cardamine hirsuta HOM05D005406 ORTHO05D006599 1.4e-21 106.7 91 58.2
Nitab4.5_0001477g0200 Nicotiana tabacum HOM05D005406 ORTHO05D006599 1.4e-21 106.7 81 66.7
GSVIVG01036964001 Vitis vinifera HOM05D005406 ORTHO05D006599 1.4e-21 106.7 125 45.6
Cc02_g20410 Coffea canephora HOM05D005406 ORTHO05D006599 2.4e-21 105.9 73 64.4
Solyc01g106470.3 Solanum lycopersicum HOM05D005406 ORTHO05D006599 2.4e-21 105.9 81 64.2
Aqoxy6G00604 Aquilegia oxysepala HOM05D005406 ORTHO05D006599 4.1e-21 105.1 81 63.0
Carub.0008s2531 Capsella rubella HOM05D005406 ORTHO05D006599 4.1e-21 105.1 80 65.0
QL11p027148 Quercus lobata HOM05D005406 ORTHO05D006599 4.1e-21 105.1 68 73.5
MD05G1112800 Malus domestica HOM05D005406 ORTHO05D006599 5.4e-21 104.8 81 64.2
Aa31LG1G17410 Aethionema arabicum HOM05D005406 ORTHO05D006599 7.1e-21 104.4 79 63.3
unitig_699.g19863 Utricularia gibba HOM05D005406 ORTHO05D006599 7.1e-21 104.4 81 60.5
AT5G64510 Arabidopsis thaliana HOM05D005406 ORTHO05D006599 9.2e-21 104.0 80 65.0
ECA234G4519 Erigeron canadensis HOM05D005406 ORTHO05D006599 9.2e-21 104.0 82 63.4
PGR142G0824 Punica granatum HOM05D005406 ORTHO05D006599 9.2e-21 104.0 81 61.7
RcHm_v2.0_Chr6g0246311 Rosa chinensis HOM05D005406 ORTHO05D006599 9.2e-21 104.0 81 63.0
Atru.chr5.2137 Acer truncatum HOM05D005406 ORTHO05D006599 1.6e-20 103.2 81 61.7
Haze_10359 Corylus avellana HOM05D005406 ORTHO05D006599 1.6e-20 103.2 79 68.4
Cfa004762 Carpinus fangiana HOM05D005406 ORTHO05D006599 3.5e-20 102.1 79 67.1
Dinv16046 Davidia involucrata HOM05D005406 ORTHO05D006599 4.6e-20 101.7 70 70.0
Oeu014213.1 Olea europaea HOM05D005406 ORTHO05D006599 4.6e-20 101.7 67 73.1
AL8G41900 Arabidopsis lyrata HOM05D005406 ORTHO05D006599 6.0e-20 101.3 73 68.5
FvH4_2g02400 Fragaria vesca HOM05D005406 ORTHO05D006599 6.0e-20 101.3 81 60.5
FvH4_2g02480 Fragaria vesca HOM05D005406 ORTHO05D006599 6.0e-20 101.3 81 60.5
FAN24G0505 Fragaria x ananassa HOM05D005406 ORTHO05D006599 6.0e-20 101.3 81 60.5
C03p61740 Brassica napus HOM05D005406 ORTHO05D006599 7.8e-20 100.9 80 63.8
BolC3t18435H Brassica oleracea HOM05D005406 ORTHO05D006599 7.8e-20 100.9 80 63.8
Ciclev10028503m.g Citrus clementina HOM05D005406 ORTHO05D006599 7.8e-20 100.9 69 69.6
MBI16_g33603_MAGBIO Magnolia biondii HOM05D005406 ORTHO05D006599 7.8e-20 100.9 82 58.5
MD10G1115400 Malus domestica HOM05D005406 ORTHO05D006599 7.8e-20 100.9 81 61.7
MBI16_g33605_MAGBIO Magnolia biondii HOM05D005406 ORTHO05D006599 1.0e-19 100.5 82 57.3
unitig_747.g21249 Utricularia gibba HOM05D005406 ORTHO05D006599 1.0e-19 100.5 81 59.3
FAN15G2054 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.3e-19 100.1 81 59.3
FAN20G2478 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.3e-19 100.1 81 59.3
FAN27G0850 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.3e-19 100.1 81 59.3
Lalb_Chr18g0060221 Lupinus albus HOM05D005406 ORTHO05D006599 1.3e-19 100.1 83 56.6
Prupe.8G157400 Prunus persica HOM05D005406 ORTHO05D006599 1.7e-19 99.8 81 60.5
arahy.Tifrunner.gnm1.ann1.SJVP3Q Arachis hypogaea HOM05D005406 ORTHO05D006599 3.0e-19 99.0 81 59.3
Gorai.008G043000 Gossypium raimondii HOM05D005406 ORTHO05D006599 3.0e-19 99.0 79 60.8
Nn1g05945 Nelumbo nucifera HOM05D005406 ORTHO05D006599 3.9e-19 98.6 79 59.5
arahy.Tifrunner.gnm1.ann1.6V09A5 Arachis hypogaea HOM05D005406 ORTHO05D006599 5.1e-19 98.2 81 59.3
Lj6g0016064 Lotus japonicus HOM05D005406 ORTHO05D006599 6.6e-19 97.8 82 59.8
DCAR_021922 Daucus carota HOM05D005406 ORTHO05D006599 8.6e-19 97.4 82 57.3
Gohir.A12G031100 Gossypium hirsutum HOM05D005406 ORTHO05D006599 8.6e-19 97.4 77 62.3
Gohir.D12G041200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 1.5e-18 96.7 79 59.5
Hma1.2p1_2001F.1_g310660 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 1.5e-18 96.7 74 64.9
PSO541G4550 Papaver somniferum HOM05D005406 ORTHO05D006599 2.5e-18 95.9 67 67.2
MD07G1171900 Malus domestica HOM05D005406 ORTHO05D006599 3.3e-18 95.5 82 57.3
THA.LOC104819322 Tarenaya hassleriana HOM05D005406 ORTHO05D006599 4.3e-18 95.1 78 59.0
TWI14G0527 Tripterygium wilfordii HOM05D005406 ORTHO05D006599 5.6e-18 94.7 65 70.8
SHI04907 Sapria himalayana HOM05D005406 ORTHO05D006599 1.6e-17 93.2 67 64.2
CANSAT25G3620 Cannabis sativa HOM05D005406 ORTHO05D006599 2.8e-17 92.4 68 61.8
Medtr2g010460 Medicago truncatula HOM05D005406 ORTHO05D006599 2.8e-17 92.4 80 56.2
PSO675G0725 Papaver somniferum HOM05D005406 ORTHO05D006599 3.6e-17 92.0 67 62.7
ECA236G2632 Erigeron canadensis HOM05D005406 ORTHO05D006599 3.1e-16 89.0 81 54.3
Os01g0767600 Oryza sativa ssp. japonica HOM05D005406 ORTHO05D006599 3.1e-16 89.0 67 58.2
Sed0003204 Sechium edule HOM05D005406 ORTHO05D006599 1.2e-15 87.0 78 55.1
Ca_00193_v3 Cicer arietinum L. HOM05D005406 ORTHO05D006599 1.5e-15 86.7 92 50.0
TPR.G32656 Trifolium pratense HOM05D005406 ORTHO05D006599 1.5e-15 86.7 82 54.9
Zm00001eb370180 Zea mays HOM05D005406 ORTHO05D006599 3.4e-15 85.5 67 56.7
MELO3C018554.2 Cucumis melo HOM05D005406 ORTHO05D006599 5.8e-15 84.7 91 45.1
HanXRQChr03g0075901 Helianthus annuus HOM05D005406 ORTHO05D006599 5.8e-15 84.7 67 59.7
CDE07G1368 Ceratophyllum demersum HOM05D005406 ORTHO05D006599 9.9e-15 84.0 80 45.0
CsaV3_7G007470 Cucumis sativus L. HOM05D005406 ORTHO05D006599 1.3e-14 83.6 91 44.0
Glyma.13G253400 Glycine max HOM05D005406 ORTHO05D006599 2.2e-14 82.8 70 57.1
ClCG02G007430 Citrullus lanatus HOM05D005406 ORTHO05D006599 2.9e-14 82.4 78 50.0
Glyma.15G061500 Glycine max HOM05D005406 ORTHO05D006599 1.1e-13 80.5 82 51.2
Lsat_1_v5_gn_7_83500 Lactuca sativa HOM05D005406 ORTHO05D006599 1.1e-13 80.5 81 45.7
MD02G1193100 Malus domestica HOM05D005406 ORTHO05D006599 1.1e-13 80.5 55 72.7
VMungo0540G2475 Vigna mungo HOM05D005406 ORTHO05D006599 1.1e-13 80.5 74 51.4
Phvul.006G198300 Phaseolus vulgaris HOM05D005406 ORTHO05D006599 1.9e-13 79.7 74 51.4
Psat1g212280 Pisum sativum HOM05D005406 ORTHO05D006599 1.9e-13 79.7 68 57.4
Sed0011512 Sechium edule HOM05D005406 ORTHO05D006599 1.9e-13 79.7 95 41.1
CDE07G0437 Ceratophyllum demersum HOM05D005406 ORTHO05D006599 5.4e-13 78.2 65 50.8
ATR0767G021 Amborella trichopoda HOM05D005406 ORTHO05D006599 7.1e-13 77.8 66 56.1
HPP92_019511 Vanilla planifolia HOM05D005406 ORTHO05D006599 3.9e-11 72.0 66 51.5
HPP92_018788 Vanilla planifolia HOM05D005406 ORTHO05D006599 1.9e-10 69.7 52 59.6
HPP92_018708 Vanilla planifolia HOM05D005406 ORTHO05D006599 6.8e-08 61.2 54 55.6
SGA_v2.0_scaffold182G39842 Striga asiatica HOM05D000429 ORTHO05D000352 1.7e-06 56.6 41 56.1
Sc18g0007270 Simmondsia chinensis HOM05D005406 ORTHO05D006599 2.9e-06 55.8 37 59.5


User provided reference genes

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