Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09077 Striga asiatica HOM05D009630 ORTHO05D405095 3.5e-86 321.6 166 100.0
SGA_v2.0_scaffold14G07017 Striga asiatica HOM05D003352 ORTHO05D003874 3.7e-11 72.4 75 52.0
SGA_v2.0_scaffold66G22507 Striga asiatica HOM05D009630 ORTHO05D018137 6.3e-11 71.6 153 36.6
SGA_v2.0_scaffold14G07023 Striga asiatica HOM05D003352 ORTHO05D003874 8.2e-11 71.2 75 52.0
SGA_v2.0_scaffold28G11770 Striga asiatica HOM05D003352 ORTHO05D003874 7.7e-09 64.7 74 48.6
Dinv39355 Davidia involucrata HOM05D003352 ORTHO05D003874 1.7e-08 63.5 74 45.9
MSTRG.22277 Avicennia marina HOM05D003352 ORTHO05D003874 2.2e-08 63.2 75 46.7
Oeu028454.1 Olea europaea HOM05D003352 ORTHO05D003874 2.2e-08 63.2 75 46.7
PSO675G7937 Papaver somniferum HOM05D003352 ORTHO05D003874 2.9e-08 62.8 72 44.4
SGA_v2.0_scaffold14G07022 Striga asiatica HOM05D003352 ORTHO05D003874 2.9e-08 62.8 61 54.1
Glyma.13G371400 Glycine max HOM05D003352 ORTHO05D003874 3.8e-08 62.4 64 50.0
CiPaw.16G051300 Carya illinoinensis HOM05D003352 ORTHO05D003874 6.5e-08 61.6 75 44.0
Lj4A48T66 Lonicera japonica HOM05D003352 ORTHO05D003874 8.5e-08 61.2 73 41.1
CSS0041517 Camellia sinensis var. sinensis HOM05D003352 ORTHO05D003874 1.9e-07 60.1 75 42.7
Dinv36012 Davidia involucrata HOM05D003352 ORTHO05D003874 1.9e-07 60.1 74 44.6
PSO541G3721 Papaver somniferum HOM05D003352 ORTHO05D003874 3.2e-07 59.3 72 43.1
Hma1.2p1_0260F.1_g104540 Hydrangea macrophylla HOM05D003352 ORTHO05D003874 5.5e-07 58.5 74 43.2
TWI56G0292 Tripterygium wilfordii HOM05D003352 ORTHO05D003874 5.5e-07 58.5 75 40.0
Nitab4.5_0000068g0130 Nicotiana tabacum HOM05D003352 ORTHO05D003874 9.4e-07 57.8 75 40.0
Thecc.08G016300 Theobroma cacao HOM05D003352 ORTHO05D003874 9.4e-07 57.8 77 41.6
vmacro04478 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 9.4e-07 57.8 63 46.0
HanXRQChr13g0416911 Helianthus annuus HOM05D003352 ORTHO05D003874 1.2e-06 57.4 84 41.7
Lj4A778G47 Lonicera japonica HOM05D003352 ORTHO05D003874 1.2e-06 57.4 65 49.2
HanXRQChr13g0416921 Helianthus annuus HOM05D003352 ORTHO05D003874 1.6e-06 57.0 84 41.7
Potri.002G129700 Populus trichocarpa HOM05D003352 ORTHO05D003874 1.6e-06 57.0 75 37.3
Actinidia29853 Actinidia chinensis HOM05D003352 ORTHO05D003874 2.1e-06 56.6 63 46.0
arahy.Tifrunner.gnm1.ann1.F136KG Arachis hypogaea HOM05D003352 ORTHO05D003874 2.1e-06 56.6 89 39.3
Glyma.15G002200 Glycine max HOM05D003352 ORTHO05D003874 2.1e-06 56.6 74 41.9
Lalb_Chr01g0011861 Lupinus albus HOM05D003352 ORTHO05D003874 2.1e-06 56.6 75 41.3
Nitab4.5_0002280g0060 Nicotiana tabacum HOM05D003352 ORTHO05D003874 2.1e-06 56.6 75 38.7
TAR381G0743 Trochodendron aralioides HOM05D003352 ORTHO05D003874 2.1e-06 56.6 74 43.2
vmacro04477 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 2.1e-06 56.6 63 44.4
arahy.Tifrunner.gnm1.ann1.P3G561 Arachis hypogaea HOM05D003352 ORTHO05D003874 2.7e-06 56.2 75 40.0
arahy.Tifrunner.gnm1.ann1.TMG43S Arachis hypogaea HOM05D003352 ORTHO05D003874 2.7e-06 56.2 75 40.0
arahy.Tifrunner.gnm1.ann1.XPY7J2 Arachis hypogaea HOM05D003352 ORTHO05D003874 2.7e-06 56.2 75 40.0
CAN.G371.84 Capsicum annuum HOM05D003352 ORTHO05D003874 2.7e-06 56.2 75 38.7
Peaxi162Scf01514g00021 Petunia axillaris HOM05D003352 ORTHO05D003874 2.7e-06 56.2 61 44.3
PGR031G3781 Punica granatum HOM05D003352 ORTHO05D003874 2.7e-06 56.2 72 44.4
QL02p006420 Quercus lobata HOM05D003352 ORTHO05D003874 2.7e-06 56.2 75 44.0
THA.LOC104803409 Tarenaya hassleriana HOM05D003352 ORTHO05D003874 3.6e-06 55.8 74 40.5
HPP92_007630 Vanilla planifolia HOM05D003352 ORTHO05D003874 3.6e-06 55.8 79 40.5
Atru.chr13.598 Acer truncatum HOM05D003352 ORTHO05D003874 4.7e-06 55.5 75 40.0
CSS0008797 Camellia sinensis var. sinensis HOM05D003352 ORTHO05D003874 4.7e-06 55.5 75 40.0
Duzib093G0466 Durio zibethinus HOM05D003352 ORTHO05D003874 4.7e-06 55.5 77 40.3
CANSAT11G0813 Cannabis sativa HOM05D003352 ORTHO05D003874 6.1e-06 55.1 75 38.7
Gohir.D06G013300 Gossypium hirsutum HOM05D003352 ORTHO05D003874 6.1e-06 55.1 81 40.7
Gorai.010G015900 Gossypium raimondii HOM05D003352 ORTHO05D003874 6.1e-06 55.1 81 40.7
Hma1.2p1_0023F.1_g015330 Hydrangea macrophylla HOM05D003352 ORTHO05D003874 6.1e-06 55.1 74 40.5
Oeu020248.1 Olea europaea HOM05D003352 ORTHO05D003874 6.1e-06 55.1 61 44.3
vmacro04475 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 6.1e-06 55.1 63 44.4
AL6G37830 Arabidopsis lyrata HOM05D003352 ORTHO05D003874 7.9e-06 54.7 71 42.3
Carub.0006s2365 Capsella rubella HOM05D003352 ORTHO05D003874 7.9e-06 54.7 71 42.3
DCAR_019485 Daucus carota HOM05D003352 ORTHO05D003874 7.9e-06 54.7 75 38.7
Gohir.D05G201760 Gossypium hirsutum HOM05D003352 ORTHO05D003874 7.9e-06 54.7 69 42.0
Gorai.009G207500 Gossypium raimondii HOM05D003352 ORTHO05D003874 7.9e-06 54.7 69 42.0
QL02p006388 Quercus lobata HOM05D003352 ORTHO05D003874 7.9e-06 54.7 75 40.0
Sed0002142 Sechium edule HOM05D003352 ORTHO05D003874 7.9e-06 54.7 75 38.7


User provided reference genes

Program Settings