Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.2e-159 566.6 312 100.0
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 5.3e-27 125.9 297 38.0
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 4.5e-26 122.9 289 37.7
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 7.6e-26 122.1 305 36.4
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 6.4e-25 119.0 285 40.0
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.4e-24 117.9 264 37.1
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.9e-24 117.5 244 38.9
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 1.9e-24 117.5 290 38.3
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 2.4e-24 117.1 289 37.7
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 9.3e-24 115.2 324 41.0
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.6e-23 114.4 320 34.4
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.6e-23 114.4 320 34.4
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 2.3e-22 110.5 343 39.7
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 2.3e-22 110.5 251 40.6
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 8.7e-22 108.6 293 35.5
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.7e-22 108.6 299 37.8
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 8.7e-22 108.6 314 34.7
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 1.1e-21 108.2 306 36.3
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.5e-21 107.8 306 35.3
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 2.5e-21 107.1 292 35.6
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.3e-21 106.7 291 35.1
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 9.6e-21 105.1 305 32.8
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-20 104.8 293 34.8
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.3e-20 104.8 266 38.7
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.6e-20 104.4 328 34.1
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.8e-20 103.6 302 37.1
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 3.7e-20 103.2 294 37.8
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 6.2e-20 102.4 336 33.9
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 8.2e-20 102.1 301 37.2
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 8.2e-20 102.1 270 35.9
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-19 101.7 289 35.6
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.4e-19 101.3 316 36.7
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.8e-19 100.9 303 31.7
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.4e-19 100.5 323 37.8
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.1e-19 100.1 305 36.1
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.3e-19 99.4 327 32.7
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 5.3e-19 99.4 311 34.4
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 6.9e-19 99.0 306 32.7
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 9.0e-19 98.6 317 36.3
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 9.0e-19 98.6 344 32.8
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 9.0e-19 98.6 312 33.3
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 9.0e-19 98.6 305 36.1
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 9.0e-19 98.6 306 34.6
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.2e-18 98.2 278 35.3
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.2e-18 98.2 245 38.4
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 2.6e-18 97.1 276 35.1
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 2.6e-18 97.1 310 41.0
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.4e-18 96.7 320 33.8
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 7.6e-18 95.5 326 36.2
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.6e-18 95.5 320 33.4
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 7.6e-18 95.5 258 36.0
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 7.6e-18 95.5 309 35.0
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 7.6e-18 95.5 308 32.8
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.3e-17 94.7 286 38.1
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.7e-17 94.4 285 37.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.2e-17 94.0 293 32.4
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 2.2e-17 94.0 311 35.7
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 2.2e-17 94.0 269 36.8
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.9e-17 93.6 322 32.3
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.9e-17 93.6 320 33.4
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.9e-17 93.6 283 35.7
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 1.1e-16 91.7 268 34.3
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.5e-16 90.5 311 35.4
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 3.2e-16 90.1 281 33.8
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 7.1e-16 89.0 304 32.2
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 7.1e-16 89.0 260 36.9
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 7.1e-16 89.0 308 33.1
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 9.3e-16 88.6 316 30.1
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.2e-15 88.2 355 33.0
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.2e-15 88.2 291 29.6
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.7e-15 87.0 237 35.0
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 2.7e-15 87.0 248 33.9
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 3.5e-15 86.7 245 35.1
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 3.5e-15 86.7 293 33.1
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 4.6e-15 86.3 321 33.3
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 4.6e-15 86.3 302 35.8
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 6.0e-15 85.9 333 34.2
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.0e-14 85.1 233 35.6
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 1.0e-14 85.1 292 35.6
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.0e-14 85.1 243 35.0
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.3e-14 84.7 293 36.2
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-14 84.7 275 32.7
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 3.0e-14 83.6 180 39.4
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 5.1e-14 82.8 243 35.8
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 5.1e-14 82.8 314 30.6
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 6.7e-14 82.4 254 33.1
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 8.7e-14 82.0 360 29.4
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 1.5e-13 81.3 327 32.1
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.9e-13 80.9 362 28.2
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.9e-13 80.9 301 31.6
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.5e-13 80.5 319 31.0
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 4.3e-13 79.7 307 32.2
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 4.3e-13 79.7 297 32.0
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 7.4e-13 79.0 267 34.1
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 7.4e-13 79.0 299 31.8
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 9.7e-13 78.6 319 29.2
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 9.7e-13 78.6 326 33.4
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 9.7e-13 78.6 90 55.6
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.3e-12 78.2 329 32.2
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.3e-12 78.2 291 34.0
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.8e-12 77.0 277 31.8
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 2.8e-12 77.0 257 31.1
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 3.7e-12 76.6 261 34.9
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 4.8e-12 76.3 304 32.9
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 4.8e-12 76.3 269 29.0
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 8.2e-12 75.5 324 28.7
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 8.2e-12 75.5 324 28.7
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.1e-11 75.1 336 30.1
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.8e-11 74.3 254 33.5
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.8e-11 74.3 304 29.9
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.4e-11 73.9 288 29.9
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 2.4e-11 73.9 235 32.3
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 2.4e-11 73.9 293 28.7
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.1e-11 73.6 333 32.1
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 3.1e-11 73.6 256 37.5
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 5.3e-11 72.8 327 28.4
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 5.3e-11 72.8 292 29.1
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 5.3e-11 72.8 279 31.2
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 5.3e-11 72.8 279 31.2
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 6.9e-11 72.4 327 30.0
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 6.9e-11 72.4 234 32.1
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 9.0e-11 72.0 78 55.1
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 9.0e-11 72.0 311 32.2
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.2e-10 71.6 306 30.1
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.5e-10 71.2 256 31.6
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 2.0e-10 70.9 336 28.6
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 3.4e-10 70.1 336 29.2
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.3e-09 68.2 326 27.6
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 1.3e-09 68.2 187 36.9
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 1.3e-09 68.2 173 32.9
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 2.2e-09 67.4 327 28.1
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 2.2e-09 67.4 327 28.1
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 2.2e-09 67.4 270 31.5
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 2.9e-09 67.0 269 33.8
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 3.8e-09 66.6 325 28.0
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 8.5e-09 65.5 150 39.3
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 8.5e-09 65.5 283 28.6
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.5e-08 63.9 317 30.3
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 3.2e-08 63.5 269 29.4
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 3.2e-08 63.5 292 29.5
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.2e-08 63.2 298 29.2
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 5.5e-08 62.8 81 49.4
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.2e-07 61.6 142 35.2
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 1.2e-07 61.6 261 29.5
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 2.1e-07 60.8 323 25.7
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.7e-07 60.5 68 52.9
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 4.6e-07 59.7 296 28.0
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 1.3e-06 58.2 280 27.1
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.3e-06 58.2 341 24.9
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 1.3e-06 58.2 81 48.1
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 2.3e-06 57.4 289 27.3
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 2.3e-06 57.4 66 54.5
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 3.0e-06 57.0 81 44.4
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 3.9e-06 56.6 78 48.7
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 5.1e-06 56.2 79 43.0
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 6.7e-06 55.8 101 39.6
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 6.7e-06 55.8 76 44.7
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 6.7e-06 55.8 85 43.5
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 8.7e-06 55.5 80 43.8


User provided reference genes

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