Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.5e-96 356.3 192 100.0
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 2.7e-42 176.0 190 58.4
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 7.4e-40 167.9 191 56.5
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 3.7e-39 165.6 183 56.8
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.1e-38 162.5 194 56.7
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 7.0e-38 161.4 194 57.7
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 9.1e-38 161.0 194 57.7
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.2e-37 160.6 194 56.2
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.1e-35 154.1 192 54.7
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.7e-34 149.4 114 72.8
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 4.7e-34 148.7 192 53.6
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.1e-34 148.3 189 54.5
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.1e-34 148.3 190 54.7
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 8.0e-34 147.9 97 80.4
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.4e-33 147.1 96 78.1
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.8e-33 146.7 141 58.2
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.0e-33 146.0 200 52.0
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 5.2e-33 145.2 109 73.4
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 6.7e-33 144.8 183 48.6
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.5e-32 143.7 191 51.8
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.5e-32 143.7 182 49.5
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.5e-32 143.7 191 51.3
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.0e-32 143.3 182 48.9
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 2.0e-32 143.3 111 69.4
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.6e-32 142.9 94 76.6
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.3e-32 142.5 194 48.5
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 3.3e-32 142.5 193 49.2
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 4.4e-32 142.1 187 52.9
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 5.7e-32 141.7 96 78.1
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 5.7e-32 141.7 190 47.9
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.7e-32 141.7 145 57.2
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 7.5e-32 141.4 193 52.8
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 2.2e-31 139.8 145 59.3
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 2.2e-31 139.8 96 76.0
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.8e-31 139.4 188 49.5
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.8e-31 139.4 122 63.9
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 2.8e-31 139.4 92 79.3
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 3.7e-31 139.0 195 48.7
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 3.7e-31 139.0 191 48.2
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 4.8e-31 138.7 193 49.2
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.4e-30 137.1 92 79.3
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.4e-30 137.1 127 64.6
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.4e-30 137.1 183 48.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.4e-30 137.1 191 51.8
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.8e-30 136.7 152 53.9
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.8e-30 136.7 127 63.8
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.8e-30 136.7 97 74.2
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.4e-30 136.3 182 48.4
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 3.1e-30 136.0 182 48.9
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 3.1e-30 136.0 140 57.9
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.1e-30 136.0 93 71.0
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 3.1e-30 136.0 169 52.1
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 4.1e-30 135.6 92 79.3
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 4.1e-30 135.6 194 49.0
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.1e-30 135.6 194 49.0
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 5.3e-30 135.2 184 48.9
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 1.2e-29 134.0 143 55.9
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.2e-29 134.0 191 49.7
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.2e-29 134.0 94 72.3
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.2e-29 134.0 135 57.0
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.6e-29 133.7 197 48.7
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.6e-29 133.7 197 48.7
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.6e-29 133.7 190 50.5
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 2.7e-29 132.9 152 52.0
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 3.5e-29 132.5 91 76.9
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 3.5e-29 132.5 91 76.9
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 4.5e-29 132.1 96 70.8
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 4.5e-29 132.1 206 47.1
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.5e-29 132.1 93 73.1
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 4.5e-29 132.1 99 72.7
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.9e-29 131.7 127 62.2
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.3e-28 130.6 182 46.7
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 2.2e-28 129.8 195 47.7
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.9e-28 129.4 142 57.0
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.9e-28 129.4 121 60.3
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.0e-28 128.6 196 48.5
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 5.0e-28 128.6 82 81.7
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 6.5e-28 128.3 111 64.0
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 6.5e-28 128.3 143 53.8
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.5e-27 127.1 142 52.8
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.5e-27 127.1 142 52.8
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.5e-27 127.1 142 52.8
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.5e-27 127.1 195 48.2
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.9e-27 126.7 197 43.7
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 2.5e-27 126.3 125 59.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 3.2e-27 125.9 184 47.8
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.2e-27 125.9 192 49.0
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.5e-27 125.2 127 59.8
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 5.5e-27 125.2 183 46.4
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 7.2e-27 124.8 197 43.7
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 7.2e-27 124.8 122 58.2
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 7.2e-27 124.8 172 50.0
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.6e-26 123.6 88 72.7
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.6e-26 123.6 122 59.0
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.6e-26 123.6 195 47.2
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 2.1e-26 123.2 180 48.9
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 2.7e-26 122.9 127 60.6
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.7e-26 122.9 94 70.2
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 4.7e-26 122.1 122 57.4
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.3e-25 119.8 92 67.4
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.0e-25 119.4 152 53.3
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 3.0e-25 119.4 144 49.3
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 6.8e-25 118.2 134 54.5
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 7.5e-24 114.8 73 79.5
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 9.8e-24 114.4 197 39.1
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.3e-23 114.0 200 43.0
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 2.2e-23 113.2 193 43.5
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 2.8e-23 112.8 77 72.7
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 8.3e-23 111.3 102 59.8
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-21 107.1 79 67.1
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.6e-21 107.1 72 75.0
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 3.3e-19 99.4 78 62.8
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 3.3e-19 99.4 108 51.9
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.1e-18 96.7 84 54.8
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 3.6e-18 95.9 109 52.3
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.7e-18 95.5 128 46.1
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.4e-17 94.0 71 73.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.6e-16 89.7 85 49.4
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 5.4e-14 82.0 155 39.4
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.3e-12 77.4 96 47.9
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.7e-12 77.0 57 75.4
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 2.8e-10 69.7 58 65.5
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.0e-09 67.8 126 36.5
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 3.1e-09 66.2 158 38.6
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 6.8e-09 65.1 42 73.8
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 2.6e-08 63.2 145 44.1
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 2.9e-07 59.7 39 76.9
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 4.1e-06 55.8 113 41.6
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 9.2e-06 54.7 37 73.0


User provided reference genes

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