Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold204G41670 Striga asiatica HOM05D002560 ORTHO05D017207 6.3e-90 334.3 200 100.0
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 3.4e-11 72.8 37 83.8
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 1.4e-09 67.4 37 78.4
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 1.9e-09 67.0 37 78.4
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.9e-09 67.0 37 78.4
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 1.9e-09 67.0 37 78.4
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 5.4e-09 65.5 37 73.0
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 5.4e-09 65.5 37 73.0
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 7.1e-09 65.1 37 75.7
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 1.2e-08 64.3 37 70.3
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 1.6e-08 63.9 37 75.7
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 1.6e-08 63.9 36 72.2
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 1.6e-08 63.9 37 73.0
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.7e-08 63.2 37 67.6
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 2.7e-08 63.2 37 73.0
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.5e-08 62.8 37 70.3
MELO3C027185.2 Cucumis melo HOM05D002560 ORTHO05D017207 3.5e-08 62.8 37 70.3
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 3.5e-08 62.8 37 70.3
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 3.5e-08 62.8 37 70.3
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 3.5e-08 62.8 37 73.0
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 3.5e-08 62.8 37 73.0
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 6.0e-08 62.0 37 75.7
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 6.0e-08 62.0 37 70.3
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 6.0e-08 62.0 37 70.3
Actinidia32555 Actinidia chinensis HOM05D002560 ORTHO05D017207 7.8e-08 61.6 37 67.6
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 7.8e-08 61.6 37 70.3
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 7.8e-08 61.6 37 70.3
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.0e-07 61.2 37 64.9
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 1.0e-07 61.2 37 64.9
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.0e-07 61.2 37 70.3
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.3e-07 60.8 35 71.4
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 1.3e-07 60.8 37 67.6
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 1.3e-07 60.8 37 70.3
SGA_v2.0_scaffold22G09847 Striga asiatica HOM05D000407 ORTHO05D001717 1.3e-07 60.8 41 75.6
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 1.3e-07 60.8 37 67.6
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 1.7e-07 60.5 37 67.6
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 1.7e-07 60.5 37 67.6
COL.COLO4_08634 Corchorus olitorius HOM05D002560 ORTHO05D003782 3.0e-07 59.7 62 51.6
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 3.0e-07 59.7 37 70.3
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 3.0e-07 59.7 37 70.3
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 3.0e-07 59.7 36 69.4
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 3.0e-07 59.7 36 69.4
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 3.0e-07 59.7 36 69.4
Cpa.g.c37981 Carica papaya HOM05D002560 ORTHO05D017207 3.9e-07 59.3 37 67.6
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 5.1e-07 58.9 37 64.9
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 6.6e-07 58.5 37 67.6
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 6.6e-07 58.5 36 66.7
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 6.6e-07 58.5 37 67.6
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 6.6e-07 58.5 37 70.3
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 6.6e-07 58.5 37 70.3
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 6.6e-07 58.5 43 60.5
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 6.6e-07 58.5 37 64.9
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 8.7e-07 58.2 37 70.3
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 8.7e-07 58.2 37 70.3
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 8.7e-07 58.2 37 70.3
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 8.7e-07 58.2 37 70.3
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 8.7e-07 58.2 37 67.6
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 8.7e-07 58.2 37 67.6
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 8.7e-07 58.2 36 66.7
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 1.1e-06 57.8 37 67.6
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.1e-06 57.8 37 67.6
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.1e-06 57.8 37 67.6
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.1e-06 57.8 37 67.6
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.1e-06 57.8 37 67.6
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.1e-06 57.8 37 67.6
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 1.1e-06 57.8 37 67.6
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.1e-06 57.8 37 67.6
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.5e-06 57.4 37 62.2
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 1.5e-06 57.4 37 67.6
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 1.5e-06 57.4 37 67.6
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 1.5e-06 57.4 37 62.2
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 1.9e-06 57.0 37 64.9
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 2.5e-06 56.6 37 62.2
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 2.5e-06 56.6 37 62.2
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 3.3e-06 56.2 37 67.6
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 3.3e-06 56.2 37 62.2
vmacro20347 Vaccinium macrocarpon HOM05D002560 ORTHO05D017207 3.3e-06 56.2 37 67.6
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 4.3e-06 55.8 37 59.5
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.3e-06 55.8 36 61.1
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 4.3e-06 55.8 37 73.0
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.6e-06 55.5 37 67.6
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.6e-06 55.5 37 67.6
Oeu064890.1 Olea europaea HOM05D002560 ORTHO05D017207 5.6e-06 55.5 37 62.2
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 5.6e-06 55.5 37 62.2
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 5.6e-06 55.5 37 64.9
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 7.3e-06 55.1 37 67.6
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 7.3e-06 55.1 37 64.9
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 7.3e-06 55.1 37 64.9
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 7.3e-06 55.1 37 64.9
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 9.6e-06 54.7 37 64.9
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 9.6e-06 54.7 37 64.9
DCAR_023987 Daucus carota HOM05D002560 ORTHO05D017207 9.6e-06 54.7 37 62.2
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 9.6e-06 54.7 37 64.9
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 9.6e-06 54.7 37 67.6


User provided reference genes

Program Settings